Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A08
         (232 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105           27   1.6  
10_06_0036 - 9914606-9915561,9916287-9916368                           27   2.8  
03_02_0911 - 12329146-12329610                                         27   2.8  
02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032     27   2.8  
01_01_0126 - 1159370-1159657,1161665-1161811,1162832-1162891,116...    26   4.9  
12_02_0360 - 17966857-17966865,17966866-17966954,17967276-179673...    25   6.5  
12_01_0419 - 3316866-3318172,3318249-3318360                           25   6.5  
08_02_1289 - 25923916-25924586,25925148-25926630                       25   8.6  
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002...    25   8.6  

>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
          Length = 430

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 159 AAGALDHELWGSHHAPSVPPIP 224
           A G   H++ G HH PS PP P
Sbjct: 22  AQGHGHHQVHGHHHQPSSPPPP 43


>10_06_0036 - 9914606-9915561,9916287-9916368
          Length = 345

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 165 GALDHELWGSHHAPSVPPIP 224
           GAL   L+G HH P  PP+P
Sbjct: 148 GALKRRLYGMHHLP--PPLP 165


>03_02_0911 - 12329146-12329610
          Length = 154

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 116 MLTRTPMLMRPRTSRGWGSGS*ALGVPSCTFG 211
           +++RT    RP + RG G+G+ A G    TFG
Sbjct: 4   LVSRTAPPARPTSLRGRGAGAVAAGHGQATFG 35


>02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032
          Length = 209

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 153 HHAAGALDHELWGSHHAPSVPPIPNY 230
           HH+   + H  W  HH PS+P   +Y
Sbjct: 179 HHSFQRM-HSHWHMHHCPSLPQATSY 203


>01_01_0126 -
          1159370-1159657,1161665-1161811,1162832-1162891,
          1163021-1163203,1163336-1163569
          Length = 303

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 5  AFASSASLFEPLSLCIPMLGRTLMPMPMH 91
          A  SSASL  P S  +P+L     P P H
Sbjct: 2  AALSSASLLPPPSTFVPVLSPLRKPPPQH 30


>12_02_0360 -
           17966857-17966865,17966866-17966954,17967276-17967399,
           17967639-17967717,17968267-17968352,17968471-17968661,
           17970496-17970560,17971192-17971282,17971705-17971801,
           17971883-17972128,17972248-17972505
          Length = 444

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 20  ASLFEPLSLCIPMLGRTLM 76
           ASLF PL+LC  ++G  ++
Sbjct: 110 ASLFSPLTLCFCIIGHAML 128


>12_01_0419 - 3316866-3318172,3318249-3318360
          Length = 472

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 213 EPKVHDGTPKAHDPEPQPR 157
           EP   D TP A +PE QP+
Sbjct: 378 EPPAADETPAAGEPEEQPK 396


>08_02_1289 - 25923916-25924586,25925148-25926630
          Length = 717

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 225 LGLVEPKVHDGTPKAHDPEPQP 160
           LG++  ++  G P ++DP PQP
Sbjct: 593 LGILILEILTGRPPSYDPPPQP 614


>04_04_1466 -
           33799104-33799229,33799659-33799669,33800052-33800200,
           33800261-33800299,33800690-33800746,33800839-33801628,
           33801705-33801980,33802051-33802117,33802211-33802285,
           33802618-33802812,33802927-33803076,33803152-33803522,
           33804070-33804193,33804246-33804275,33804306-33804417,
           33804919-33804985,33805138-33805180,33805768-33805872
          Length = 928

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 186 WGSHHAPSVPPIPNY 230
           W  HHA + PP P+Y
Sbjct: 14  WPPHHAAAQPPPPSY 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,055,710
Number of Sequences: 37544
Number of extensions: 89306
Number of successful extensions: 299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)