Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A08
         (232 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007069-1|AAH07069.1|  162|Homo sapiens riboflavin kinase protein.    28   4.6  
AK002011-1|BAA92033.1|  162|Homo sapiens protein ( Homo sapiens ...    28   4.6  

>BC007069-1|AAH07069.1|  162|Homo sapiens riboflavin kinase protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 98  MERTVQMLTRTPMLMRPRTSRGWGSGS*ALGVPSCTF 208
           M R   ++   P   R +  RG+G GS  LG+P+  F
Sbjct: 1   MPRADCIMRHLPYFCRGQVVRGFGRGSKQLGIPTANF 37


>AK002011-1|BAA92033.1|  162|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11149 fis, clone PLACE1006731, weakly similar to
           RIBOFLAVIN KINASE (EC 2.7.1.26)/ FMN ADENYLYLTRANSFERASE
           (EC ).
          Length = 162

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 98  MERTVQMLTRTPMLMRPRTSRGWGSGS*ALGVPSCTF 208
           M R   ++   P   R +  RG+G GS  LG+P+  F
Sbjct: 1   MPRADCIMRHLPYFCRGQVVRGFGRGSKQLGIPTANF 37


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,512,871
Number of Sequences: 237096
Number of extensions: 452731
Number of successful extensions: 1350
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 76,859,062
effective HSP length: 55
effective length of database: 63,818,782
effective search space used: 1340194422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)