Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_A08
(232 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000191-3|AAB52882.1| 522|Caenorhabditis elegans Mediator prot... 29 0.34
Z81073-8|CAN86905.1| 271|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z81073-7|CAB03032.2| 248|Caenorhabditis elegans Hypothetical pr... 25 5.5
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 25 7.2
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 25 7.2
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 25 7.2
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 25 7.2
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 25 7.2
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 25 7.2
Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p... 25 9.5
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p... 25 9.5
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 25 9.5
AL034393-3|CAA22319.1| 348|Caenorhabditis elegans Hypothetical ... 25 9.5
>AF000191-3|AAB52882.1| 522|Caenorhabditis elegans Mediator protein
1.2 protein.
Length = 522
Score = 29.5 bits (63), Expect = 0.34
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 65 RTLMPMPMHKLMERTVQMLTRTPMLMRPRTSRGW 166
+T MP+ + LME ++++ + + +TSRGW
Sbjct: 79 KTKMPIEENNLMEEKIRVMAESLGCLHKQTSRGW 112
>Z81073-8|CAN86905.1| 271|Caenorhabditis elegans Hypothetical
protein F30F8.5b protein.
Length = 271
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 231 SNLGLVEPKVHDGTPKAHDPE 169
S+L E K D TP+AH PE
Sbjct: 7 SSLKSAEKKDTDATPRAHSPE 27
>Z81073-7|CAB03032.2| 248|Caenorhabditis elegans Hypothetical
protein F30F8.5a protein.
Length = 248
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 231 SNLGLVEPKVHDGTPKAHDPE 169
S+L E K D TP+AH PE
Sbjct: 7 SSLKSAEKKDTDATPRAHSPE 27
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -2
Query: 225 LGLVEPKVHDGTPKAHDPEPQPRD----VRGRMSIGV 127
+G+ KV +GTP AHD + D V G IG+
Sbjct: 997 MGIYVKKVVEGTPAAHDGRLETGDQLLSVNGHSLIGI 1033
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -2
Query: 225 LGLVEPKVHDGTPKAHDPEPQPRD----VRGRMSIGV 127
+G+ KV +GTP AHD + D V G IG+
Sbjct: 15 MGIYVKKVVEGTPAAHDGRLETGDQLLSVNGHSLIGI 51
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -2
Query: 225 LGLVEPKVHDGTPKAHDPEPQPRD----VRGRMSIGV 127
+G+ KV +GTP AHD + D V G IG+
Sbjct: 995 MGIYVKKVVEGTPAAHDGRLETGDQLLSVNGHSLIGI 1031
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -2
Query: 225 LGLVEPKVHDGTPKAHDPEPQPRD----VRGRMSIGV 127
+G+ KV +GTP AHD + D V G IG+
Sbjct: 995 MGIYVKKVVEGTPAAHDGRLETGDQLLSVNGHSLIGI 1031
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -2
Query: 225 LGLVEPKVHDGTPKAHDPEPQPRD----VRGRMSIGV 127
+G+ KV +GTP AHD + D V G IG+
Sbjct: 995 MGIYVKKVVEGTPAAHDGRLETGDQLLSVNGHSLIGI 1031
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -2
Query: 225 LGLVEPKVHDGTPKAHDPEPQPRD----VRGRMSIGV 127
+G+ KV +GTP AHD + D V G IG+
Sbjct: 995 MGIYVKKVVEGTPAAHDGRLETGDQLLSVNGHSLIGI 1031
>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/72 (23%), Positives = 28/72 (38%)
Frame = -2
Query: 216 VEPKVHDGTPKAHDPEPQPRDVRGRMSIGVRVSICTVXXXXXXXXXXXSVRPSIGMHRDR 37
V PK G P++ P+ R ++ R + CT + + M R+
Sbjct: 17 VRPKHPRGVPQSQSTFPRGRSNFSSGTLPNRKTECTPVNTLTIGHSNKMLLTTFRMDRNS 76
Query: 36 GSKSDADDAKAP 1
SKS+ D + P
Sbjct: 77 KSKSEVDVQEQP 88
>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/72 (23%), Positives = 28/72 (38%)
Frame = -2
Query: 216 VEPKVHDGTPKAHDPEPQPRDVRGRMSIGVRVSICTVXXXXXXXXXXXSVRPSIGMHRDR 37
V PK G P++ P+ R ++ R + CT + + M R+
Sbjct: 17 VRPKHPRGVPQSQSTFPRGRSNFSSGTLPNRKTECTPVNTLTIGHSNKMLLTTFRMDRNS 76
Query: 36 GSKSDADDAKAP 1
SKS+ D + P
Sbjct: 77 KSKSEVDVQEQP 88
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/52 (23%), Positives = 18/52 (34%)
Frame = -2
Query: 207 KVHDGTPKAHDPEPQPRDVRGRMSIGVRVSICTVXXXXXXXXXXXSVRPSIG 52
K+ P + P P P S V + V +VRP++G
Sbjct: 1193 KMASSNPSVYCPPPVPSTAAPSTSTAVPTTTVPVTTTIATTTRVTTVRPTVG 1244
>AL034393-3|CAA22319.1| 348|Caenorhabditis elegans Hypothetical
protein Y18D10A.3 protein.
Length = 348
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 62 GRTLMPMPMHKLMERTVQMLTRTPMLMR 145
GR MP+ K ME ++ L +TP++ +
Sbjct: 76 GRVFSKMPISKSMELSLVKLKQTPIIQQ 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,711,656
Number of Sequences: 27780
Number of extensions: 63389
Number of successful extensions: 216
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -