Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_A08
(232 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 24 0.28
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 0.49
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 1.1
EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle pr... 21 1.5
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 2.0
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 2.0
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 2.0
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 21 2.6
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 20 4.6
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 19 6.1
AY078400-1|AAL83703.1| 31|Apis mellifera major royal jelly pro... 19 6.1
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.8 bits (49), Expect = 0.28
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 8 FASSASLFEPLSLCIPMLGRTLM 76
F A + P SL IP+LG+ L+
Sbjct: 295 FLLLAEIIPPTSLAIPLLGKYLL 317
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.0 bits (47), Expect = 0.49
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 8 FASSASLFEPLSLCIPMLGRTLM 76
F A + P SL +P+LG+ L+
Sbjct: 282 FLLLAEIIPPTSLTVPLLGKYLL 304
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.8 bits (44), Expect = 1.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 8 FASSASLFEPLSLCIPMLGRTLM 76
F A + P SL +P+LG+ ++
Sbjct: 286 FLLLAEIIPPTSLVVPLLGKFVL 308
>EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle
protein protein.
Length = 138
Score = 21.4 bits (43), Expect = 1.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 144 VRVHHAAGALDHELWGSHHAPSVPPIP 224
V + + A ++ GSH P+ PPIP
Sbjct: 85 VSITYVADENGFQVQGSH-IPTAPPIP 110
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.0 bits (42), Expect = 2.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -2
Query: 222 GLVEPKVHDGTPKAHDPEPQPRDVR 148
GLV GT + HDP P R
Sbjct: 388 GLVSGSSTPGTGREHDPAKFPPSFR 412
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.0 bits (42), Expect = 2.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 8 FASSASLFEPLSLCIPMLGRTLM 76
F + P SL +P+LG+ L+
Sbjct: 290 FLLVVEIIPPTSLVVPLLGKYLI 312
Score = 19.4 bits (38), Expect = 6.1
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +3
Query: 198 HAPSVPPIP 224
H P +PP+P
Sbjct: 437 HGPPLPPLP 445
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.0 bits (42), Expect = 2.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 8 FASSASLFEPLSLCIPMLGRTLM 76
F + P SL +P+LG+ L+
Sbjct: 290 FLLVVEIIPPTSLVVPLLGKYLI 312
Score = 19.4 bits (38), Expect = 6.1
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +3
Query: 198 HAPSVPPIP 224
H P +PP+P
Sbjct: 437 HGPPLPPLP 445
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 20.6 bits (41), Expect = 2.6
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +2
Query: 140 MRPRTSRGWG 169
+R +T+RGWG
Sbjct: 495 VRAKTTRGWG 504
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 19.8 bits (39), Expect = 4.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -3
Query: 53 VCIGIGVQRATQTTQR 6
VC+GI Q T T R
Sbjct: 9 VCLGIACQGITSVTVR 24
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 19.4 bits (38), Expect = 6.1
Identities = 7/17 (41%), Positives = 8/17 (47%)
Frame = -3
Query: 53 VCIGIGVQRATQTTQRH 3
VC+GI Q T H
Sbjct: 9 VCLGIACQDVTSAAVNH 25
>AY078400-1|AAL83703.1| 31|Apis mellifera major royal jelly
protein MRJP3 protein.
Length = 31
Score = 19.4 bits (38), Expect = 6.1
Identities = 7/17 (41%), Positives = 8/17 (47%)
Frame = -3
Query: 53 VCIGIGVQRATQTTQRH 3
VC+GI Q T H
Sbjct: 9 VCLGIACQDVTSAAVNH 25
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,148
Number of Sequences: 438
Number of extensions: 823
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used: 3785850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
- SilkBase 1999-2023 -