Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A05
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   0.76 
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    26   1.0  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   1.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   4.0  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    24   4.0  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    23   7.1  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    23   9.3  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      23   9.3  

>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.6 bits (56), Expect = 0.76
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 172 PLPVTEFSGAPEPSCVTKLYVAGATDIFAILLKKMNLSSLYSTR---LQYVRIC 20
           P+P    S    P+ +  +  A ATDI   ++   NL S+Y++      Y ++C
Sbjct: 339 PIPWNGGSNTYSPTALAAIRAACATDINFDVVNASNLDSMYTSGKIVAMYAQVC 392


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 260 TWTNAFCAAFFWSVAL*PCCFFILD 186
           TW NAF   F  +  L  C F ILD
Sbjct: 442 TWRNAFFDEFIGTAVLVGCLFAILD 466


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 208 PVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYVAGAT 98
           PV SSS T S  P P T  S  P P+  +    A +T
Sbjct: 840 PVQSSSTTSSITPTPTTTSSITPTPTTTSTTTTAQST 876


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 18   EQIRTYCNLVEYKELKFIFFSNIANISVAPATYNLVTQDGSG 143
            E++ +  N+ +    K++ F N+ N+  A A+Y  + Q G G
Sbjct: 1321 EEVCSVFNISKSVCSKYVQFGNVFNLLHAGASYIRIHQKGYG 1362


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 195 EETTGSQCY*PEEGCTKSISPC 260
           E+    +CY  EE C+K+ + C
Sbjct: 282 EKNYNGRCYISEEACSKATNDC 303


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 214 CDPVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYVAG 104
           CDPV+ S+ T + +     EFS     S + +  V G
Sbjct: 818 CDPVLLSNMTINSETFDDFEFSVEQFNSLINQFVVTG 854


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 89  KYISSTSYVQFSDTRWLGGTRK 154
           KY +    V  SDT WL GT+K
Sbjct: 182 KYFAKADCVCISDTYWL-GTKK 202


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 63   KFIFFSNIANISVAPATYNLVTQDGS 140
            KF++++ +A + V+P  + LV  DGS
Sbjct: 1033 KFVYWAYVAPVLVSPDNFKLV--DGS 1056


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,014,197
Number of Sequences: 5004
Number of extensions: 16270
Number of successful extensions: 56
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)