Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A05
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0235 - 21149167-21149395,21149633-21149703,21149812-211498...    28   1.5  
09_02_0237 + 6141048-6141962                                           25   8.0  
07_01_0681 + 5135060-5135233,5135544-5135726,5135987-5136118,513...    25   8.0  
02_05_0755 - 31519765-31519896,31520073-31520135,31520236-315203...    25   8.0  
02_05_0130 - 26070784-26070801,26071440-26072627                       25   8.0  

>02_04_0235 -
           21149167-21149395,21149633-21149703,21149812-21149889,
           21150269-21150375,21150467-21150599
          Length = 205

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 181 SQQPLPVTEFSGAPEPSCVTKLYVAGATDIFAILLKKMN 65
           S  P+PV   S   EP  +++   AGA D F +   KMN
Sbjct: 110 SPNPIPVVVMSSENEPQRISRCLTAGAED-FILKPLKMN 147


>09_02_0237 + 6141048-6141962
          Length = 304

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 204 TGSQCY*PEEGCTKSISPCVC 266
           +G   Y PE+GC  ++ P +C
Sbjct: 164 SGGGVYCPEDGCASAVDPELC 184


>07_01_0681 +
           5135060-5135233,5135544-5135726,5135987-5136118,
           5136815-5136916,5137109-5137132,5137558-5137662,
           5139132-5139251
          Length = 279

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 70  MNLSSLYSTRLQYVRICSSLS 8
           M+L  L   +LQY+ ICS LS
Sbjct: 252 MDLKRLSGPQLQYLNICSELS 272


>02_05_0755 -
           31519765-31519896,31520073-31520135,31520236-31520352,
           31520553-31520642,31520897-31520984,31521462-31521531,
           31521945-31522023,31523231-31523275,31523927-31524013,
           31524101-31524184,31524304-31524483,31524562-31524702,
           31524873-31524981,31525411-31525466,31525877-31525924,
           31526021-31526159,31526710-31526817,31527138-31527164,
           31527325-31527417,31527837-31527916,31528051-31528140,
           31528286-31528376,31528503-31528591,31528756-31528794,
           31530611-31530733
          Length = 755

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 121 KLYVAGATDIFAILLKKMNLSSLYSTRLQYVRI 23
           KLY   A D+F IL +++ + +  ST +   RI
Sbjct: 433 KLYTPAAVDLFRILTEQVQIVTENSTDVMLYRI 465


>02_05_0130 - 26070784-26070801,26071440-26072627
          Length = 401

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = -1

Query: 295 WDPAFEPCKLHTHGLMLFVQPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAP 140
           WD A +PC     G+  +  P+S   H    VS         LP T  +  P
Sbjct: 63  WDFARDPCAAFPCGVRCYAPPNSSSYHRVTGVSLDPAGYSGTLPATVLASLP 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,833,656
Number of Sequences: 37544
Number of extensions: 114025
Number of successful extensions: 233
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)