Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_A05
(295 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical pr... 42 1e-04
AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein. 42 1e-04
U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical p... 33 0.047
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 31 0.19
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 31 0.19
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 27 1.8
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 27 1.8
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 27 1.8
AC006673-2|AAF39928.1| 300|Caenorhabditis elegans Serpentine re... 25 7.1
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 25 9.4
>Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical
protein C01F6.9 protein.
Length = 73
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/54 (44%), Positives = 25/54 (46%)
Frame = +1
Query: 133 MARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCVVCKAQMPDP 294
MARG QKI + DQK AA KAL H C VC A MPDP
Sbjct: 1 MARGQQKIQSQQKNQKKADAARK----AGIDQKAAAAKALNHKCTVCLAMMPDP 50
>AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein.
Length = 73
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/54 (44%), Positives = 25/54 (46%)
Frame = +1
Query: 133 MARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCVVCKAQMPDP 294
MARG QKI + DQK AA KAL H C VC A MPDP
Sbjct: 1 MARGQQKIQSQQKNQKKADAARK----AGIDQKAAAAKALNHKCTVCLAMMPDP 50
>U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical
protein K10B3.1a protein.
Length = 73
Score = 32.7 bits (71), Expect = 0.047
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +1
Query: 133 MARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCVVC 273
MARGHQK G +DQK AA +L H C VC
Sbjct: 1 MARGHQKALSQQRNAEKTAKAKKAVG---SDQKNAAMASLHHKCTVC 44
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -1
Query: 238 QPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPS 131
+PS+G DP+ +S TF Q P TEF GAP S
Sbjct: 50 EPSAGF-GIDPITTSK-TFGSQTTPKTEFGGAPSLS 83
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -1
Query: 238 QPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPS 131
+PS+G DP+ +S TF Q P TEF GAP S
Sbjct: 50 EPSAGF-GIDPITTSK-TFGSQTTPKTEFGGAPSLS 83
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -1
Query: 247 LFVQPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYV---AGATDIFAILL 77
L V+ S + H VSS T S+ P P + +G +P T+ +TDIF+
Sbjct: 135 LKVEEMSDEKHAQSPVSSDMTTSKSPTPSKKENGLMKPPQSTEKAQRKRKESTDIFSSEK 194
Query: 76 KKMNLSSLYST 44
+K++L ++ S+
Sbjct: 195 RKLSLETVASS 205
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -1
Query: 247 LFVQPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYV---AGATDIFAILL 77
L V+ S + H VSS T S+ P P + +G +P T+ +TDIF+
Sbjct: 135 LKVEEMSDEKHAQSPVSSDMTTSKSPTPSKKENGLMKPPQSTEKAQRKRKESTDIFSSEK 194
Query: 76 KKMNLSSLYST 44
+K++L ++ S+
Sbjct: 195 RKLSLETVASS 205
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -1
Query: 247 LFVQPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYV---AGATDIFAILL 77
L V+ S + H VSS T S+ P P + +G +P T+ +TDIF+
Sbjct: 135 LKVEEMSDEKHAQSPVSSDMTTSKSPTPSKKENGLMKPPQSTEKAQRKRKESTDIFSSEK 194
Query: 76 KKMNLSSLYST 44
+K++L ++ S+
Sbjct: 195 RKLSLETVASS 205
>AC006673-2|AAF39928.1| 300|Caenorhabditis elegans Serpentine
receptor, class x protein62 protein.
Length = 300
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 116 VRSWCY*YICYIAKEDELKFFILNEIAICANL 21
V + Y +C+I ED+ F + +CAN+
Sbjct: 138 VAIYLYEILCHIYYEDKSDFLTFTDSKLCANI 169
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 205 VVSSS*TFSQQPLPVTEFSGAPE 137
+V S+ T S PLP T SG P+
Sbjct: 753 IVPSTPTISPAPLPTTGSSGGPD 775
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,831,639
Number of Sequences: 27780
Number of extensions: 99704
Number of successful extensions: 227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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