Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A04
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   1.5  
SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   3.4  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    25   5.9  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   5.9  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.9  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    24   7.8  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    24   7.8  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +3

Query: 207 DRTGLCLSGVRLRLSTRARSVG*NFKKI------ILVYYSYILCKQYRYEINRISSCI 362
           +R    LS   LRLS R  ++   +  +      +++ YS  LC ++   I+R S CI
Sbjct: 70  ERGVFSLSSKSLRLSNRKGTIRWRYHSVPCVQRSMIILYSCFLCSKHAVLISRDSDCI 127


>SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 81

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 206 NVTGPRGNTRNKYGT*VCVHVPLTTEHSLDSQTSNTTCCNKSGNFWTI 63
           N T P GNT N  GT    +   TT  S  +Q+S  +  N S   + I
Sbjct: 22  NSTAPYGNTTNSTGTTNGTNGTNTTTSSTATQSSAASITNFSSGAFVI 69


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 86  YYSRSYLKFANRASAPWSEVRAHRLTYHI 172
           Y   + LK       PW E R  ++ YH+
Sbjct: 115 YLPHAVLKLLENMPMPWEEYREVKVLYHV 143


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 3   TRQHHSSHVRGLAHVW-TASHYRPKVS 80
           TRQ HS+HV     +W T  + RP V+
Sbjct: 105 TRQIHSAHVSTYDRLWSTLPYLRPLVT 131


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -2

Query: 212 PVNVTGPRGNTRNKYGT*VCVHVPLTTEH---SLDSQTSNTTCCNKSG 78
           PVN+ GPR  +RN   +     +P+   +   +     S+T    +SG
Sbjct: 586 PVNMRGPRNTSRNNSSSEFNAQIPMNLRNGPRNASRSNSSTDLFGQSG 633


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 141 RYVHTDLRTIFIPSIASRTRDIDRTGLCLS 230
           R  H  L+  F PS A   RDI  T  CL+
Sbjct: 8   RECHPFLQRSFFPSFALSHRDIISTRACLN 37


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 28  YGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECSVVRGTCTQT 159
           YGV   SG  V+ +  FP L  +    +  +S  S +  T T T
Sbjct: 299 YGVVTVSGDSVSTLTDFPYLSSRYASVIPSASYESTMSATLTAT 342


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 235 TPLRHSPVRSMSRVLEAILGINMVRKSVCTYL*PRSTRSIRKLQI 101
           TPL    V S   V + I   N +RK+  T     S+RS   LQ+
Sbjct: 296 TPLTRVLVTSPEEVSQVIEQCNAIRKTAATDFNTYSSRSHAILQV 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,699
Number of Sequences: 5004
Number of extensions: 29789
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)