Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A04
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    27   4.3  
09_03_0210 - 13509814-13510965                                         27   5.6  
07_03_1607 + 28119886-28120239,28121097-28121153,28121377-281214...    27   5.6  
05_06_0040 + 25116732-25118030                                         27   7.5  
12_02_0928 + 24488891-24489675,24490369-24490421,24490479-244912...    26   9.9  
06_03_0962 + 26351861-26351899,26353304-26353530,26355183-263554...    26   9.9  

>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +3

Query: 30   RGLAHVWTASHYRPKVSRFITAGRI*SLRIERVLRGQRYVHTDLRTIFIPS-IASRTRD- 203
            R LA V     YRP  S+ +  G +   R+E++L+G     T L  + I S +A  ++D 
Sbjct: 983  RPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLLKGPIAKETLLDFLMIVSDLARMSKDF 1042

Query: 204  ---IDRTGL 221
               ID+ G+
Sbjct: 1043 YEPIDKAGM 1051


>09_03_0210 - 13509814-13510965
          Length = 383

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 134 TEHSLDSQTSNTTCCNKSGNFWTIVTGCPDVSE 36
           T++S     SN TCC K  + W+   G  +  E
Sbjct: 335 TKYSTMGDHSNGTCCEKCADVWSYKLGQQETRE 367


>07_03_1607 +
           28119886-28120239,28121097-28121153,28121377-28121464,
           28121557-28121686,28121783-28121962,28122291-28122759
          Length = 425

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +1

Query: 1   ARGNTTAPMYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECSVVRGTCTQTYVPYLFL 180
           A GN T P+  +  T GQ   +V K   +            +C +VR   TQTY  Y+ L
Sbjct: 106 ASGNLTFPI-SLKQTGGQMAQLVLKADKMQLYSPGPRDAPMKCFIVRNRTTQTYYLYIGL 164


>05_06_0040 + 25116732-25118030
          Length = 432

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 22  PMYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECSVVRGTCTQTYVPYLFLVLPLGPV 201
           P Y   L+S   V + ++  DL  +  F++C    C+     CTQ  +P +     LG V
Sbjct: 296 PFYTAILSSLASVILYERSYDLEMRTGFDLCFKIPCT--HTPCTQDELPLINFHF-LGDV 352

Query: 202 TLT 210
            LT
Sbjct: 353 KLT 355


>12_02_0928 +
           24488891-24489675,24490369-24490421,24490479-24491229,
           24491322-24491533,24491780-24492570,24492686-24492784
          Length = 896

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 140 LTTEHSLDSQTSNTTCCNKSGNFWTIVTGCPDVSETPY 27
           LT +H +D +   ++ C  S      ++ C D++E PY
Sbjct: 721 LTIDHCIDLKELPSSICEISSLESISISNCHDLTELPY 758


>06_03_0962 +
           26351861-26351899,26353304-26353530,26355183-26355421,
           26356276-26356495,26358093-26358214,26358428-26358729,
           26358776-26358883,26359314-26359376,26359415-26359621,
           26359702-26359812,26359899-26360228
          Length = 655

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 27  VRGLAH-VWTASHYRPKVSRFITAGRI*SLRI 119
           +RG  H  W+   Y  +V+RFI A R+ S+ +
Sbjct: 352 LRGFLHQTWSVPRYGFQVTRFIQASRLISIEL 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,234,084
Number of Sequences: 37544
Number of extensions: 184776
Number of successful extensions: 399
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)