Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A04
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-2|AAF40009.1|  562|Caenorhabditis elegans Acetylcholine...    29   1.7  
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    28   2.2  
U41274-5|AAA82461.2|  571|Caenorhabditis elegans Nematode astaci...    28   2.2  
AJ561208-1|CAD99210.1|  278|Caenorhabditis elegans NAS-15 protei...    28   2.2  
Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z81116-2|CAB03302.1|  346|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U23486-4|AAC46776.2|  261|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF067944-5|AAC17673.1|  335|Caenorhabditis elegans Seven tm rece...    27   6.8  
Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical pr...    26   9.0  
Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical pr...    26   9.0  
AF038623-1|AAB94156.1|  346|Caenorhabditis elegans Seven tm rece...    26   9.0  
AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.      26   9.0  

>AC006834-2|AAF40009.1|  562|Caenorhabditis elegans Acetylcholine
           receptor protein 6 protein.
          Length = 562

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 276 NFKKIILVYYSYILCKQYRYEINRISSCICL 368
           ++  I + YY +I  K+  Y +N I  C+CL
Sbjct: 215 DYPSIDITYYLHIRRKKLFYTVNMIIPCVCL 245


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +1

Query: 43  TSGQPVTIVQKFPDLLQQVVFEVCESSECSVVRGTCTQTYVPYL 174
           TSG P  I Q   +      FE CE       R   +Q+ VPYL
Sbjct: 318 TSGSPAKITQYVQEAGVGAYFEFCEMLANGATRYWDSQSQVPYL 361


>U41274-5|AAA82461.2|  571|Caenorhabditis elegans Nematode astacin
           protease protein15 protein.
          Length = 571

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 13  TTAPMYGVSLTSGQPVTIVQKFPDLLQQVVFEV-CESSECSVVRGTC 150
           T+AP  G  + + +PV I    P ++Q V   V  + SEC  +RG C
Sbjct: 315 TSAPTSGPIVITVKPVVITTGKPPVIQTVSPAVPLKPSECRNLRGDC 361


>AJ561208-1|CAD99210.1|  278|Caenorhabditis elegans NAS-15 protein
           protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 13  TTAPMYGVSLTSGQPVTIVQKFPDLLQQVVFEV-CESSECSVVRGTC 150
           T+AP  G  + + +PV I    P ++Q V   V  + SEC  +RG C
Sbjct: 209 TSAPTSGPIVITVKPVVITTGKPPVIQTVSPAVPLKPSECRNLRGDC 255


>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 103 FEVCESS-ECSVVRGTCTQTYVPYLFLVLPLGPVTLT 210
           F  C+   +  + R    QT  P LFLVLP  P  LT
Sbjct: 231 FSPCQVKIQSQIFRALVAQTVGPTLFLVLPSAPFFLT 267


>Z81116-2|CAB03302.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.2 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 103 FEVCESS-ECSVVRGTCTQTYVPYLFLVLPLGPVTL 207
           F  C+   +  + +   TQT  P LFLVLP  P  L
Sbjct: 231 FSACQVKFQSQIFKALVTQTVGPTLFLVLPSAPFFL 266


>U23486-4|AAC46776.2|  261|Caenorhabditis elegans Hypothetical
           protein F07F6.2 protein.
          Length = 261

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 243 RLSTRARSVG*NFKKIILVYYSYILCKQYRYEIN 344
           +L  R  SVG  F   I +YYS I+C+  +++I+
Sbjct: 10  QLHLRWYSVGLIFFSFIPIYYSIIVCQPQQFKID 43


>AF067944-5|AAC17673.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 67 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 154 QTYVPYLFLVLPLGPVTLT 210
           QT  P +FL++P GP+ +T
Sbjct: 249 QTIGPTIFLIIPTGPILMT 267


>Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical
           protein C26H9A.1 protein.
          Length = 966

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
 Frame = +1

Query: 1   ARGNTTAPMYGVSLTSGQPVTI--VQKFPDLLQQVVFEVCESSECSVVRGTCTQTYVPYL 174
           A G    P+     T+  P T     KF ++ Q +V     S  C V     T    P+L
Sbjct: 411 ASGTEVEPILNELWTNAPPPTFHRTNKFTNVFQSIVDSYGVSQYCEVNPAPYTIITFPFL 470

Query: 175 FLVL 186
           F V+
Sbjct: 471 FAVM 474


>Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical
           protein T11G6.8 protein.
          Length = 408

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 322 NNTGMRLTEFQVVSVCKICYLPYNNFR 402
           NN  MR+ + +    CKIC  P+  FR
Sbjct: 31  NNPYMRMMKDKYGRECKICERPFTTFR 57


>AF038623-1|AAB94156.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 170 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +1

Query: 58  VTIVQKFPDLLQQVVFEVCESSECSVVRGTCTQTYVPYLFLVLPLG 195
           V  ++K   LL ++  +  ++ +  + +    QT +P LF+ +P G
Sbjct: 226 VKSLKKIKQLLGRLESKFSKNLQMQLYKALVAQTLIPVLFIFIPFG 271


>AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.
          Length = 966

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
 Frame = +1

Query: 1   ARGNTTAPMYGVSLTSGQPVTI--VQKFPDLLQQVVFEVCESSECSVVRGTCTQTYVPYL 174
           A G    P+     T+  P T     KF ++ Q +V     S  C V     T    P+L
Sbjct: 411 ASGTEVEPILNELWTNAPPPTFHRTNKFTNVFQSIVDSYGVSQYCEVNPAPYTIITFPFL 470

Query: 175 FLVL 186
           F V+
Sbjct: 471 FAVM 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,065,979
Number of Sequences: 27780
Number of extensions: 173523
Number of successful extensions: 515
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)