Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A04
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   4.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   5.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 400 GNCYMVNNKSYKQIQLEIRLISYLYC 323
           G  Y++N K+Y      ++L  YL+C
Sbjct: 28  GFSYLLNCKNYDHPTTLLKLKRYLFC 53


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +1

Query: 34  VSLTSGQPVTIVQKFPDLLQQVVFEVCESSECSVVRGTCTQTYVPYLFLVLPLGPVTLTG 213
           V LT G    IV +   ++ + +    E+++     G  T T V    L+  +GPV+   
Sbjct: 22  VMLTRGTVNDIVSRNITMVLENLLMNYENNQLPT-HGKGTPTVVKTNILIRSMGPVSELD 80

Query: 214 QDY 222
            DY
Sbjct: 81  MDY 83


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 295 KMIFLKFYPTLRALVDKRSRTPL 227
           +M+ + F P++  +VD  +  PL
Sbjct: 358 RMLDMGFLPSIEKMVDHETMVPL 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,353
Number of Sequences: 438
Number of extensions: 2390
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)