Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P24
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    30   0.24 
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    29   0.43 
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    27   2.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    26   4.0  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   4.0  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.2  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    26   5.2  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   6.9  
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    25   9.1  

>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 263 VVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKH 442
           V+K+    YD +GN +    +EIP  +K +  R  +    + F  E++ + + S   K +
Sbjct: 142 VLKSKTLAYDGRGNYVVHQPSEIPTAIKALGDRPLYVEKFVPFSMEIAVMVVRSLDGKVY 201

Query: 443 A--KSDTIKRD 469
           A   ++TI++D
Sbjct: 202 AYPTTETIQKD 212


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
 Frame = +2

Query: 164 NESSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNK--LPSNLAEIPD 337
           N S   T ET  +F   I +S++    +     ++   Y    P+ N   L S L+ +  
Sbjct: 23  NPSVPYTIETIVSFFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENNDALFSKLSNLVS 82

Query: 338 FLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKHAKSDTI 460
            LK   T     + ILYFL  LSP+S +S  V  H   ++I
Sbjct: 83  RLKS-QTVIHNKSQILYFLYLLSPISQSSRDVSSHLLDESI 122


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 115 LLHFVESLLRDYEGVVHGLIEDPLVVMSHMLLLRTCY 5
           LL F+E +  DYE  +H L      + +H+ L    Y
Sbjct: 400 LLKFIEEIRNDYEERIHALESQNSALKAHLRLAVDAY 436


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +2

Query: 260  PVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTEL-----SPLSMTS 424
            P++  +  ++ PK  +L  NLAEI +   H  +  +F   + Y   E+     S L  TS
Sbjct: 2081 PLLLRNNLIHTPKATELWENLAEIDN---HTASGAAFQRLLYYLALEIPNEDSSVLGWTS 2137

Query: 425  FYVKKH 442
              V KH
Sbjct: 2138 LKVSKH 2143


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 33/136 (24%), Positives = 58/136 (42%)
 Frame = +2

Query: 44  ERILNQAVDDALIISQQAFNKMKQGKSSKQPLFNYDRCHFNESSCLTAETSDNFIVTIYN 223
           E +L++   +  ++SQQ+ N     +SS QPL N D  H         +  +  I     
Sbjct: 311 EHLLSECSHEINVLSQQSKNFNGVFESSYQPLIN-DLDH----QISVMQNDEKRINNAKT 365

Query: 224 SLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTEL 403
            L+  ++K +E    K   +VY  K ++L +    + +  K + TR++     L  L +L
Sbjct: 366 ELSLSLEKKLE--AKKQKEKVYKDKLDELANLETMVLEKKKAVATREAANKIRLVDLNDL 423

Query: 404 SPLSMTSFYVKKHAKS 451
                 S Y+ K   S
Sbjct: 424 ELQKDLSTYLSKELAS 439


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 255 RYQSSKLITKSMTRKVINYLQI*QKYLIFSNIFLRGN 365
           R +++++I K MTR+ ++Y     KY++  N  LR N
Sbjct: 3   RAENARIIQKPMTRRTVDYGSGLSKYIV--NRHLRSN 37


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 135 HCLIMTGVTLMNPVV*QRKRVIISLSRYITAWL 233
           H  I+   T    +V   +R+  S SRY++AWL
Sbjct: 620 HTNIVALQTYAKSIVSTSRRLYASTSRYVSAWL 652


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 233 WKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHI 382
           W  +  I +    ADY   DP   +L  N    P F+ H+  R+S   HI
Sbjct: 544 WIDRNLIRLCQHFADYRKEDPSSFRLLPNFTLYPQFIFHL--RRSPFLHI 591


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 170 SSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVV 268
           SS   AET    I+TI NSL + V  FI  P +
Sbjct: 7   SSVAIAETRRQIILTIINSLVYLV-NFISCPSI 38


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 6/135 (4%)
 Frame = +2

Query: 14  TEKQHVTHDYERILNQAVDDALIISQQAFNK----MKQGKSSKQPLFNYDRCHFN--ESS 175
           T K  +   YE   N+   + L +   A N      KQG  S     +      N  +  
Sbjct: 110 TGKSAIDMTYEEFANEINVNLLGVFNVAHNAGPIFQKQGHGSLVATASMSGVVVNVPQQQ 169

Query: 176 CLTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIP 355
           C    TS   ++ +  SLA + +KF  +  V   Y   D  G K          F ++  
Sbjct: 170 C-AYNTSKAGVIQLIKSLAVEWRKFARVNCVSPGYTTSDMTGGKFHKEWEPYTPFERN-G 227

Query: 356 TRKSFATHILYFLTE 400
             K  A+  LY  ++
Sbjct: 228 LAKEIASAYLYLASD 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,161
Number of Sequences: 5004
Number of extensions: 46359
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)