Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P24
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245...    50   1e-06
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937...    46   3e-05
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608...    29   2.3  

>10_01_0232 +
           2456449-2456652,2456814-2456897,2459113-2459201,
           2459245-2459452,2459764-2459883,2460004-2460087,
           2460171-2460242,2460342-2460455,2460852-2460952,
           2461024-2461117,2461265-2461432,2461539-2461616,
           2461908-2461973,2462052-2462108,2462353-2462572,
           2462867-2463003,2465379-2465450,2465530-2465577,
           2465681-2465806,2465982-2466047,2466508-2466620,
           2467348-2467432,2467885-2467980,2468067-2468114,
           2468190-2468258,2468393-2468581
          Length = 935

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
 Frame = +2

Query: 5   ITGTEKQHVTHDYERIL-------NQAVDDALIISQQAFNKMKQGKSSKQPLFNYDRCHF 163
           ++GT KQH T DY + L        + V+ AL     +       K S+  L N   C  
Sbjct: 424 VSGTAKQHTTDDYSKRLAIGVSQVEKGVNTALSCLTSSKGTCTATKFSQCQLLNISYCPS 483

Query: 164 NESSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEI 331
            E    +A++    ++ +YN L W+   F+ +PV  A+  V    G  L S L E+
Sbjct: 484 TEEGISSAKS---LVIVVYNPLGWERSDFVRVPVNDANLIVKTSDGTSLESQLVEV 536


>11_05_0014 +
           18392622-18392834,18393064-18393147,18393709-18393797,
           18393889-18394063,18394370-18394489,18394591-18394677,
           18394755-18394826,18395166-18395279,18395387-18395487,
           18395576-18395669,18395794-18395961,18396287-18396352,
           18396475-18396531,18396708-18396927,18397015-18397151,
           18397573-18397641,18397722-18397781,18397927-18397998,
           18398171-18398218,18398376-18398495,18398743-18398808,
           18399341-18399453,18399821-18399905,18400246-18400356,
           18400436-18400531,18401075-18401143,18401235-18401453
          Length = 974

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 32/109 (29%), Positives = 48/109 (44%)
 Frame = +2

Query: 5   ITGTEKQHVTHDYERILNQAVDDALIISQQAFNKMKQGKSSKQPLFNYDRCHFNESSCLT 184
           +TGTEKQHV +DY + L+                         PL N   C  +E   + 
Sbjct: 417 VTGTEKQHVANDYAKRLSIGYTQC-------------------PLLNITYCPPSE---MD 454

Query: 185 AETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEI 331
                + +V +YNSL WK +  + IPV+     V+D +G ++ S L  I
Sbjct: 455 LSQGKSLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPI 503


>03_06_0221 +
           32458867-32459149,32460271-32460386,32460461-32460807,
           32461231-32461411,32461507-32461629,32461828-32462115,
           32462536-32462688,32463068-32463169,32463260-32463313,
           32463518-32463624,32463867-32463927,32464019-32464150,
           32464245-32464382,32464459-32464539,32464635-32464715,
           32465133-32465213,32465300-32465413
          Length = 813

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 206 IVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTR 361
           ++ ++ +L    + F E P ++   E Y  +G K     ++IPD+LKH+ TR
Sbjct: 262 LLKMFTALGMYSESF-EKPFLECTSEFYATEGVKYLQQ-SDIPDYLKHVETR 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,678,867
Number of Sequences: 37544
Number of extensions: 236660
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)