Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P24
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0) 68 7e-12
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0) 68 7e-12
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 29 4.2
SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32) 27 9.7
SB_27229| Best HMM Match : 7tm_1 (HMM E-Value=0.0014) 27 9.7
SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1) 27 9.7
SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
Length = 965
Score = 67.7 bits (158), Expect = 7e-12
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Frame = +2
Query: 5 ITGTEKQHVTHDY-ERILNQAVDDALIISQQAFNKMKQGKSSKQPLFNYDRCHF-NESSC 178
++GT KQHV DY +R+ A D ++S K + K + P+F+ C+ N SSC
Sbjct: 366 VSGTSKQHVADDYAKRLAIGAADCQALMSNVIGKKSIKSKGNAPPVFS--SCNLLNVSSC 423
Query: 179 LTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPD---FLKH 349
+ E S +F+V YN +A + +I +P V VY+P+G + S L I L+
Sbjct: 424 PSTEDSKSFVVNAYNPIARDITSYIRVP-VNLPMSVYNPQGAAIKSQLLPISQETMTLRR 482
Query: 350 I-PTRKSFATHILYFLTELSPLSMTSFYV 433
+ S + + L F +L PL S++V
Sbjct: 483 MQKLSASNSKYELIFKVKLPPLGFASYFV 511
>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
Length = 887
Score = 67.7 bits (158), Expect = 7e-12
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Frame = +2
Query: 5 ITGTEKQHVTHDY-ERILNQAVDDALIISQQAFNKMKQGKSSKQPLFNYDRCHF-NESSC 178
++GT KQHV DY +R+ A D ++S K + K + P+F+ C+ N SSC
Sbjct: 354 VSGTSKQHVADDYAKRLAIGAADCQALMSNVIGKKSIKSKGNAPPVFS--SCNLLNVSSC 411
Query: 179 LTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPD---FLKH 349
+ E S +F+V YN +A + +I +P V VY+P+G + S L I L+
Sbjct: 412 PSTEDSKSFVVNAYNPIARDITSYIRVP-VNLPMSVYNPQGAAIKSQLLPISQETMTLRR 470
Query: 350 I-PTRKSFATHILYFLTELSPLSMTSFYV 433
+ S + + L F +L PL S++V
Sbjct: 471 MQKLSASNSKYELIFKVKLPPLGFASYFV 499
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 254 EIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKS 367
E+ ++K +V + NKL S L+E FLK + T K+
Sbjct: 1904 ELEIMKIRVDVLSSENNKLNSKLSETSTFLKDVKTSKT 1941
>SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1702
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 515 VIQDSGLVDIDTLEEANTVNDKFGTIEQKVN 607
VI++ VD+D+L EA ++ + G E+KV+
Sbjct: 1357 VIEEYRFVDLDSLNEAKRIHRRLGKCEEKVS 1387
>SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 581 ICH*QYSLLPEYLCLLNQN-LESLSNIHWYYNNI 483
+C +SLL +CLL N LE + +WYYN +
Sbjct: 243 VCMVLFSLLLYSICLLPANILELVIAAYWYYNKV 276
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 28.7 bits (61), Expect = 4.2
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = +2
Query: 104 KMKQGKSSKQPLFNYDRCHFNESSCLTAETSDNFIV--TIYNSLAWKVKKFIEIPVVKAD 277
++ G + + N D C N + TS NF++ T+ NS+ ++ + +D
Sbjct: 1127 EISDGSPTPVVIHNQDFCADNSQFVYSVATSGNFLIDPTLDNSVLFEHCGESQEVSSASD 1186
Query: 278 YEVYDPKGNKLPSNLAEIPDFLKHIPT--RKSFATHILYFLTELSPLSMTS 424
+E+Y K+ L P+ + T R H L FL P + TS
Sbjct: 1187 FEIYSKLKGKVFFTLCGSPEGTFDVVTLRRGEINGHQLNFLRVQIPENRTS 1237
>SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)
Length = 524
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 155 CHFNESSCLTAETSDN 202
CHF+ SSCLT +T+ N
Sbjct: 121 CHFHLSSCLTGQTAMN 136
>SB_27229| Best HMM Match : 7tm_1 (HMM E-Value=0.0014)
Length = 309
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 155 CHFNESSCLTAETSDN 202
CHF+ SSCLT +T+ N
Sbjct: 113 CHFHLSSCLTGQTAMN 128
>SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1)
Length = 281
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 403 KLSEKIQYMCGKRFPRRNM 347
KL++ +Q MC KRF RR++
Sbjct: 38 KLTDSVQKMCRKRFERRHL 56
>SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +2
Query: 296 KGNKLPS-NLAEIPDFLKHIP 355
KG ++P NL E+P+FLK +P
Sbjct: 570 KGARIPKENLPELPEFLKELP 590
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,673,273
Number of Sequences: 59808
Number of extensions: 297357
Number of successful extensions: 747
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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