Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P24
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    51   6e-07
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    28   6.4  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z81534-3|CAB04347.3|  328|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z66523-6|CAA91415.1|  161|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 3/160 (1%)
 Frame = +2

Query: 5   ITGTEKQHVTHDYERILNQAVDDALIISQQAFNKMK-QGKSSKQPLFNYDRCHFNESSCL 181
           +TGT K++VT DYE+ L + V +  ++      KM   G   K  L        NE+ C 
Sbjct: 415 VTGTAKENVTRDYEKQLAKGVSEVEVVINDFMKKMNPDGLDPKLVLCPL----INETICK 470

Query: 182 TAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEI--PDFLKHIP 355
               S  F V I+NS        I IP  +    + D   N L S + E    D LK   
Sbjct: 471 PINGSSEFSVVIFNSNGRYFNGTIRIPYSQKTAVLRDAHKNVLESQIVETFQIDQLKD-T 529

Query: 356 TRKSFATHILYFLTELSPLSMTSFYVKKHAKSDTIKRDTR 475
            R  +  H+      + PL  T+ +V+K +K + +  + R
Sbjct: 530 DRLPYEIHV---FVRVPPLGYTTVFVEKGSKPERVHFNNR 566


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 296 KGNKLPSNLAEIPDFLKHIPTRKSFATHILY 388
           K NK PS +   P   KH+P  K     I+Y
Sbjct: 758 KPNKSPSTMFRYPQCTKHVPATKVVIVRIIY 788


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6b protein.
          Length = 1345

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 281 EVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKHAKS 451
           E Y   G +LP  +  + +  +  P       + L   T L P S+T+F++ ++ K+
Sbjct: 760 EEYRKDGKELPKQMKLLHESYERCPMLGDDVRYNLALKTFLPPKSITNFFINRNRKT 816


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6a protein.
          Length = 1343

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 281 EVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKHAKS 451
           E Y   G +LP  +  + +  +  P       + L   T L P S+T+F++ ++ K+
Sbjct: 758 EEYRKDGKELPKQMKLLHESYERCPMLGDDVRYNLALKTFLPPKSITNFFINRNRKT 814


>Z81534-3|CAB04347.3|  328|Caenorhabditis elegans Hypothetical
           protein F37H8.4 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 302 NKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTS 424
           ++L SNL   PD  K   +++++   + +F T  +PL++TS
Sbjct: 2   SELVSNLKTRPDISKPQWSQRTYYGRVRHFFTLTNPLTLTS 42


>Z66523-6|CAA91415.1|  161|Caenorhabditis elegans Hypothetical
           protein M05D6.6 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 305 KLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKHAKSDTIKRD 469
           KL  + A+IP ++ H    +      + F+   S    ++FY+ + A +  I RD
Sbjct: 97  KLYPSAADIPPYVHHGTMNRMHDRMRVVFIVTASLFFFSTFYIAERAMAQKIARD 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,697,188
Number of Sequences: 27780
Number of extensions: 241661
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)