Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P23
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.24 
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            32   0.24 
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)             31   0.56 
SB_8170| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.56 
SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_33552| Best HMM Match : MIF (HMM E-Value=9.7)                       31   0.56 
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)              30   0.74 
SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)                  30   0.97 
SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)                    29   2.2  
SB_30204| Best HMM Match : DUF1644 (HMM E-Value=7.7)                   29   2.2  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_33707| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)                    27   5.2  
SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)             27   5.2  
SB_14345| Best HMM Match : GFO_IDH_MocA (HMM E-Value=3.9e-09)          27   5.2  
SB_1014| Best HMM Match : HEAT (HMM E-Value=0.097)                     27   5.2  
SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)              27   6.9  
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_22443| Best HMM Match : Prosystemin (HMM E-Value=6.7)               27   6.9  
SB_5482| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  

>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -3

Query: 361 FSKKSAAESTNLDSTCASLAFGSSDSGSKARADL-GEPLLSKVTPSIKVISLFDLKVSAY 185
           F   + AE  ++DST  + + GSS SG +   D  G+ +  ++T    V++L  ++    
Sbjct: 94  FPNSNKAEDADIDSTSCTNSHGSSLSGRRGLEDFKGDDIEDELTQLKAVVALRSIQKGDS 153

Query: 184 FKTFSLRHIYTSSST 140
            K+F L  +     T
Sbjct: 154 PKSFDLSSVCDEGKT 168


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 17/52 (32%), Positives = 33/52 (63%)
 Frame = +3

Query: 225  IDGVTLESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLENYVIQFK 380
            ++ +T+ES+   RSA +L+ + D+ K R A+ E R VD+ + ++E+   + K
Sbjct: 1210 LEQLTMESEEMHRSASSLKAIVDKIKERLAESEDR-VDACSSYIEDLEKEIK 1260


>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
          Length = 583

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 31  FTRLSYF*SRRCARCPPNRNLQILESVAAFWALLRTVSTM 150
           F+ + YF  ++ +  PPN+  Q     AAFW  L T++T+
Sbjct: 334 FSSVIYFTEQKMSDGPPNKPSQFSSIPAAFWYTLVTMTTL 373


>SB_8170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 138 CVDDDVYMC---LKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPK 302
           C D ++  C    KEK+ +YA+  R  + +TL +G T+  K      ++  P    P+
Sbjct: 18  CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 75


>SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 138 CVDDDVYMC---LKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPK 302
           C D ++  C    KEK+ +YA+  R  + +TL +G T+  K      ++  P    P+
Sbjct: 72  CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 129


>SB_33552| Best HMM Match : MIF (HMM E-Value=9.7)
          Length = 148

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 138 CVDDDVYMC---LKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPK 302
           C D ++  C    KEK+ +YA+  R  + +TL +G T+  K      ++  P    P+
Sbjct: 20  CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 77


>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
          Length = 1452

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 138 CVDDDVYMCLKEKVLKYAETLRSKREITLIDGVTLESKGSPRS 266
           CV  D + C   K+L Y ET+  K+ I ++   T+ +K S RS
Sbjct: 761 CVLQDEFYCSPAKILHYVETVFFKKLIAVVQ-KTVRAKQSQRS 802


>SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)
          Length = 788

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 174 KVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADF 353
           +VL+  ++L    E  +   + +E KG+  +A     L  +P+A E  ++ RL       
Sbjct: 152 RVLRITDSLLHGEEEEMRGWLLVEQKGALGTATVTRSLDTDPQASELVIQVRLAGGIGVS 211

Query: 354 LENYV 368
           + NYV
Sbjct: 212 VVNYV 216


>SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 181 KTFSLRHIYTSSSTQSLTMPKTLPPIPRSVDSCSVGI 71
           KTF    ++T  STQ      TLP I   VD  +V I
Sbjct: 523 KTFMFDRVFTPDSTQEQVFEDTLPLIASCVDGYNVCI 559


>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
          Length = 166

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 364 MLFSSKCHHLLSKESEGPLEEGRGKK 441
           ML + K H L+SKE+   L+ GR KK
Sbjct: 79  MLLNVKLHSLMSKENVKDLKSGRSKK 104


>SB_30204| Best HMM Match : DUF1644 (HMM E-Value=7.7)
          Length = 267

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = +2

Query: 92  YRSWNR---WQRFGHC*GLCR 145
           + SW+R   W RFG C G+CR
Sbjct: 10  FGSWDRFGSWDRFGSCTGICR 30


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 25/89 (28%), Positives = 40/89 (44%)
 Frame = +3

Query: 78   TEQESTDLGIGGSVLGIVKDCVDDDVYMCLKEKVLKYAETLRSKREITLIDGVTLESKGS 257
            +EQ    L    S+   ++  VDD  +   K  + K  + LR K EI   +      +  
Sbjct: 1415 SEQVHDSLAHAQSLKDDLESQVDDLNFQ--KSSLEKENDLLRKKMEIVEEEMKLTAIENK 1472

Query: 258  PRSARALEPLSDEPKAREAQVESRLVDSA 344
            P  A   +PLS+E +A +AQ+    V+ A
Sbjct: 1473 PLDAVDAKPLSEENEALKAQISQITVELA 1501


>SB_33707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = -3

Query: 415 DLLIPSTADDGI---LN*IT*FSKKSAAESTNLDSTCASLAFGSSDSGSKARADLGEPLL 245
           DL+I S +  G+   LN +  + K S   S NLD T  S +  SS S   + +  G+  L
Sbjct: 226 DLVILSKSAKGLQEYLNSLKEYCKASEL-SINLDKTKGSQSISSSLSLQLSSSVGGQHSL 284

Query: 244 SKVTPSIKVISLFD 203
             +  +IKVI+ +D
Sbjct: 285 HDIDNAIKVIASYD 298


>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
          Length = 847

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 225 IDGVTLESKGSPRSARALEPLSDEPKAREAQVESRLVDSAAD 350
           ++GV+  S+ S   A+ LE L+ E + +    +SRL +S A+
Sbjct: 739 LEGVSKASEQSKTHAQKLESLNKEQENKLVDAQSRLEESEAE 780


>SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)
          Length = 742

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/55 (30%), Positives = 32/55 (58%)
 Frame = -3

Query: 358 SKKSAAESTNLDSTCASLAFGSSDSGSKARADLGEPLLSKVTPSIKVISLFDLKV 194
           ++ +AA S +L ++  +LA  S+ SGS ++  +G+  L K+    ++    DLKV
Sbjct: 239 AESTAASSESLVASSPALASISNASGSSSQFSVGDLTLGKIGRVQQIYHDNDLKV 293


>SB_14345| Best HMM Match : GFO_IDH_MocA (HMM E-Value=3.9e-09)
          Length = 408

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -2

Query: 296 LIGQRLQSTCGPWRTFALQGDTINQSYLPLRPQSLCIFQNLLLEAHIHVIVDTVLNNAQN 117
           +  QR  S  G  +TF  Q DTI+ S+  +     C FQ +L +      V   LN+  +
Sbjct: 189 MTNQRAVSVNGTLKTFITQTDTIS-SFRHITSDDFCTFQMVLSDG---AFVTVTLNSHSS 244

Query: 116 AATDS 102
           +++ +
Sbjct: 245 SSSQT 249


>SB_1014| Best HMM Match : HEAT (HMM E-Value=0.097)
          Length = 168

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 89  IYRSWNRWQRFGHC*GLCRR*RVYVPQGEGFEICRDFEVEE 211
           +YR ++RWQ      G+C++ R+ V      ++ +DF   E
Sbjct: 28  LYRGYSRWQTREEGRGICKQ-RLKVLAKNNMDVLKDFNYSE 67


>SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)
          Length = 1642

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 210  REITLIDGVTLES--KGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLENYV 368
            RE+ L DG++  S  KG        +  SD P+  + Q     V+S+ DF+   V
Sbjct: 1481 REVELTDGLSQGSVNKGVNGQDSECQDESDHPEVADRQASDLSVESSQDFVNKDV 1535


>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 222 LIDGVTLESKGSPRSARALEPLSDEPKAREAQV 320
           L+D V+  SK SP+ AR L  L+ +P+  E  V
Sbjct: 606 LLDYVSFVSKPSPKCARLLSRLTRDPQCFELLV 638


>SB_22443| Best HMM Match : Prosystemin (HMM E-Value=6.7)
          Length = 274

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 210 REITLIDGVTLES--KGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLENYV 368
           RE+ L DG++  S  KG        +  SD P+  + Q     V+S+ DF+   V
Sbjct: 113 REVELTDGLSQGSVNKGVNGQDSECQDESDHPEVADRQASDLSVESSQDFVNKDV 167


>SB_5482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 153 VYMCLKEKVLKYAETLR--SKREITLIDGVTLESKGSPRSARALEPLSDEP 299
           +Y C + + L  AE L    K    ++DGVTL S    +   +L P + EP
Sbjct: 19  MYRCARVQGLDTAEGLFLFGKEHFYVVDGVTLLSTKEIKDIDSLPPATHEP 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,232,592
Number of Sequences: 59808
Number of extensions: 289123
Number of successful extensions: 1118
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)