Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P22
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    28   0.83 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.5  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.4  
SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1 famil...    25   5.9  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   7.7  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    25   7.7  

>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 71  GPCFRCVPPLPRP-LAECPLAG 9
           GPC+RC+ P P P +A C  +G
Sbjct: 181 GPCYRCMFPNPTPVVASCAKSG 202


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 94  ELDAQLEQYMAGTKAALDKELDAYMKNAPEI 186
           E  +QL +     K    K++DAY+K APEI
Sbjct: 756 EFVSQLRRMAVIVKHGKFKKMDAYVKGAPEI 786


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 198 WWLMYLGSILHVSVQLLIQ 142
           +W+ YL  I+HV   LL+Q
Sbjct: 50  YWMSYLSIIMHVGQSLLLQ 68


>SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 79  MLTKEELDAQLEQYMAGTKAALD 147
           MLT++E+ AQL QYM      LD
Sbjct: 1   MLTQDEVSAQLGQYMLRGYTLLD 23


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 74 FGPCFRCVPPLPRPLAECPLA 12
          FGP  RC  P+PR     P A
Sbjct: 30 FGPLIRCDIPIPRTRTSRPFA 50


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -2

Query: 201 SWWLMYLGSILHVSVQLLIQGSLRPRHVLFQLSVQLLLGEHRL 73
           SW +M L  + H+  + ++   L+P ++L      L L +  L
Sbjct: 112 SWMVMLLRGLHHIHSRFILHRDLKPNNLLISSDGVLKLADFGL 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,185
Number of Sequences: 5004
Number of extensions: 39171
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)