Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P22
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0046 + 19211961-19212231,19212651-19212706,19212947-192130...    28   6.0  
02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817           28   6.0  

>02_04_0046 +
           19211961-19212231,19212651-19212706,19212947-19213011,
           19213138-19213212,19213305-19213383,19213591-19213629,
           19213712-19213820,19214334-19214452,19215282-19215401,
           19215846-19216232
          Length = 439

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 68  PCFRCVPPLPRPLAEC 21
           PC+RC+ P P P+A C
Sbjct: 205 PCYRCLFPNPPPVAAC 220


>02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817
          Length = 633

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 82  LTKEELDAQLEQYMAGTKAALDKELDAYMKNAPEIH 189
           L+ E  DA + ++++  K  L+ ELD  +K   E+H
Sbjct: 234 LSDELFDASMLEHLSFLKNGLEGELDGQLKRLEELH 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,408,853
Number of Sequences: 37544
Number of extensions: 242239
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)