Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P22
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)                 41   6e-04
SB_9497| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_3865| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                27   8.1  

>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
          Length = 221

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 17/33 (51%), Positives = 26/33 (78%)
 Frame = +1

Query: 85  TKEELDAQLEQYMAGTKAALDKELDAYMKNAPE 183
           +K++LD +L+QYM+ +K  LD ELD YM++A E
Sbjct: 188 SKDQLDKELDQYMSHSKGHLDAELDKYMQHADE 220


>SB_9497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 265 VDSSFGKSASLISFIRQSRFQFMVANVSREHSSCKR 158
           + S+F + AS+ S  R  RF F+  + S   +SC R
Sbjct: 321 LSSTFARPASVASLTRVVRFSFLARSTSVFEASCSR 356


>SB_3865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 17  GDIQQEDVVEAVHNGNXXXXXXXXXXSWTLSWNSTWRG 130
           GD+++ D+++ V NG            W L   +TWRG
Sbjct: 19  GDVEEPDIIQQVQNG---TYVVVYGSPWYLLSTTTWRG 53


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -3

Query: 80   IVFGPCFRCVPPLPRP--LAECPLAGPR 3
            ++  P F C  P+P P  L+ CP+  PR
Sbjct: 1913 VILPPVFACPVPVPVPLVLSRCPVIDPR 1940


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,645,781
Number of Sequences: 59808
Number of extensions: 288848
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)