Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P21
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    53   2e-08
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    50   2e-07
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    30   0.13 
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   2.0  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   3.6  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    25   4.7  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   6.2  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    24   8.2  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    24   8.2  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    24   8.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    24   8.2  

>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = +1

Query: 190 APIGSLQPNATKEGRIKCTLIPGDGVGPELVYSVQEVFKASSIPVDFESFFFSEV--NPT 363
           A  G+ +      G    T+I GDG+GPE+  SV+ +FKA+ +P+++E      +  N T
Sbjct: 31  AAAGTYEGVKNANGNYTVTMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPILKNGT 90

Query: 364 LSAPLEDVVNSIAKNKI 414
            + P +D   S+ KNK+
Sbjct: 91  TTIP-DDAKESVRKNKV 106


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
 Frame = +1

Query: 229 GRIKCTLIPGDGVGPELVYSVQEVFKASSIPVDFESFFFSEV---NPTLSAPLEDVVNSI 399
           G+   TLIPGDG+G E   +V E+FK +++P++FE    + +   N +    L + + S+
Sbjct: 19  GKYTVTLIPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSL 78

Query: 400 AKNKI 414
            +NK+
Sbjct: 79  KRNKV 83


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 238 KCTLIPGDGVGPELVYSVQEVFK 306
           K  ++PGD +GPE+V S  EV K
Sbjct: 5   KIVVLPGDHIGPEIVASALEVLK 27


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
 Frame = +1

Query: 259 DGVGPELVYSVQEVFKASSIPVD-------FESFFFSEVN--PTLSAPLEDVVNSIAK 405
           DG GP L +   E  K    PVD       F+    S+++  P +  P+E    +IAK
Sbjct: 415 DGYGPTLHFPPSEALKLWGYPVDESDITSLFQKHIMSDISAIPWIDEPVEVETKTIAK 472


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 365 KVGFTSEKKKDSKSTGMLDALKTSCTEYT-NSGPT 264
           K+ +TS   +   S G +   KT  T YT NS P+
Sbjct: 654 KLSYTSHNGRHGGSNGNISGAKTPMTNYTINSMPS 688


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 289 VQEVFKASSIPVDFESFFFSEVNPTLSAPLEDVVNSI 399
           ++ V  A++  +DF +  FS        PLED+ N++
Sbjct: 23  IRFVTPATTDSMDFTAISFSWEESNTGIPLEDITNTV 59


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 160 SVNTERNVRFAPIGSL-QPNATKEGRIKCT 246
           S   ER +R A I +   PN TKEG   CT
Sbjct: 728 SEEKERRLREAKIAAFFAPNQTKEGSDGCT 757


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 392 LTTSSNGALKVGFTSEKKKDSKSTGMLDALKTSCTEY-TNSGPTPSPGIRVHLIRPS 225
           +T  ++G  K   T+ K+K  K  G L  L TS +    +S PT +P   + + +PS
Sbjct: 127 VTLQNDGGSK-NTTARKQKQLKKNG-LRPLNTSASRIGLSSSPTNTPSPNLPVSQPS 181


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 232 RIKCTLIPGDGVGPELVYSVQEVFK 306
           RI   LIP DG+G E+V + + + +
Sbjct: 6   RIVLGLIPADGIGKEVVPAARRLME 30


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 21   SKNISCKN*PFSKGIWQILRMSLISXKCFSCPCTGITTHRQGSPYKFGKH 170
            SK +S +  PFSK + Q+L+   +S   F   C       + +P +  +H
Sbjct: 945  SKGVSRR--PFSKSLHQVLQCKDVSFLSFISDCLKWDPDERMTPQQAAQH 992


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 322 RECLMP*KPPVLNILTQVLRHPP 254
           +EC +   PPVLNI  + L  PP
Sbjct: 248 KECPISTAPPVLNIGDRSLETPP 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,663
Number of Sequences: 5004
Number of extensions: 39118
Number of successful extensions: 93
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)