Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P21
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467...    31   0.37 
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349...    31   0.37 
08_01_0662 + 5714108-5714147,5714336-5715669,5716482-5716673,571...    29   2.0  
05_05_0305 - 23970692-23970825,23972323-23973703                       27   4.6  
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510...    27   6.0  
05_02_0142 - 7052040-7052759                                           27   6.0  

>06_01_0646 +
           4678422-4678508,4679042-4679123,4679236-4679327,
           4679441-4679518,4679635-4679696,4680272-4680993,
           4681115-4681272
          Length = 426

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 118 VQGSQHIGKGVHTSSVNTERNVRFAPIGSLQPNAT-KEGRIKCT 246
           ++G   I K +HT ++N ER++RF  +  L PN+T  + R  CT
Sbjct: 341 LEGRTQIFK-IHTRTMNCERDIRFELLARLCPNSTGADIRSVCT 383


>02_05_0986 -
           33334205-33334362,33334487-33334662,33334774-33334955,
           33335064-33335282,33335407-33335551,33336127-33336188,
           33336282-33336359,33336517-33336608,33337086-33337167,
           33337519-33337605
          Length = 426

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 118 VQGSQHIGKGVHTSSVNTERNVRFAPIGSLQPNAT-KEGRIKCT 246
           ++G   I K +HT ++N ER++RF  +  L PN+T  + R  CT
Sbjct: 341 LEGRTQIFK-IHTRTMNCERDIRFELLARLCPNSTGADIRSVCT 383


>08_01_0662 +
           5714108-5714147,5714336-5715669,5716482-5716673,
           5716769-5716958,5717398-5717477
          Length = 611

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = -3

Query: 416 QILFLAIELTTSSNGALKVGFTSEKKKDSKSTGMLDALKTSCTEYTNSGPTPSPGIRVHL 237
           ++LFL +EL+ S+  A+ +GF  E K+ S +   L+ +   C++            RVH+
Sbjct: 514 EMLFLKLELSYSNKEAINIGF--ELKERSFACKNLEVVNIRCSKDDE---------RVHM 562

Query: 236 IRPSFVALGCS-EPMGAKRT 180
           +   FVA G   E +  +RT
Sbjct: 563 LAEIFVANGLPIEKIYVRRT 582


>05_05_0305 - 23970692-23970825,23972323-23973703
          Length = 504

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 296 SCTEYTNSGPTPSPGIRVHLIRPSFVALGCSEP 198
           S T YTN+G   +  I  +  RP  V+L   EP
Sbjct: 79  SYTSYTNNGAIDATPISAYKTRPGIVSLDGDEP 111


>12_01_0618 -
           5099021-5099668,5099701-5100221,5100311-5100352,
           5100905-5100962
          Length = 422

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 395 ELTTSSNGALKVGFTSEKKKDSKSTGML--DALKTSC--TEYTNSGPTPS 258
           E +   N  LK+    E+ +D    GML  +  K  C  T  ++SGP PS
Sbjct: 205 ETSKDENERLKINLAEEEDEDEPLKGMLVGEKDKNECLKTMRSSSGPCPS 254


>05_02_0142 - 7052040-7052759
          Length = 239

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 332 SKSTGMLDALKTSCTEYTNSGPTPSPGIRVHLIRPSFVALG 210
           + S G  D    S TE   +GPTP    RV  +RP  V+ G
Sbjct: 119 ASSLGTRDVHAVS-TEVDRAGPTPRQAYRVEAVRPVPVSGG 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,147,968
Number of Sequences: 37544
Number of extensions: 259913
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)