Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P21
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   6e-04
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 28   2.7  
SB_27| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   2.7  
SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)                   28   3.6  
SB_39056| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)                    27   4.7  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              27   6.2  
SB_55753| Best HMM Match : CbiQ (HMM E-Value=1.7)                      27   8.2  
SB_36139| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_42821| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_10370| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +1

Query: 229 GRIKCTLIPGDGVGPELVYSVQEVFK 306
           GR   TLIPGDGVGPELV  V+++FK
Sbjct: 64  GRHTVTLIPGDGVGPELVNCVKQMFK 89


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 392 LTTSSNGALKVGFTSEKKKDSKSTGMLDALKTSCTEYTNSGPTPSPGI 249
           L TSS  + K    + +K  S+ T +  +LKTS      + PT SP I
Sbjct: 170 LKTSSKTSPKTSLNTSRKT-SRKTSLKRSLKTSTKTSLKTNPTTSPEI 216


>SB_27| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 382 PPTVHLKL-DSLRKRRKTQNQRECLMP 305
           PPT HL+   SLRKR++  N  E L P
Sbjct: 35  PPTWHLRRRQSLRKRKRAMNVPEVLSP 61


>SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)
          Length = 539

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 66  WQILRMSLISXKCFSCPCTGITTHRQGS 149
           W   +  L+S   F  P TG+  HR+ S
Sbjct: 397 WSFTKRKLLSKLSFEAPMTGLEIHRESS 424


>SB_39056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 404 LAIELTTSSNGALKVGFTSEKKKDSKSTGMLDALK 300
           L I +T   N   ++  T+EKKKDS  T   D LK
Sbjct: 372 LPITVTIFRNRKNRIKATTEKKKDSTRTKFFDHLK 406


>SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 298 VFKASSIPVDFESFFFSEVNPTLSAPLEDV 387
           VFK ++ P  F  F   E+NPTL A   D+
Sbjct: 216 VFKIANCPRAFVDFSKGEINPTLEARRSDL 245


>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
          Length = 475

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 242 HLIRPSFVALGCSEPMGA 189
           HL +P+   LGC +P+GA
Sbjct: 353 HLSKPTLAVLGCFQPLGA 370


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 404  LAIELTTSSNGALKVGFTSEKKKDSKSTGMLDALKT 297
            L +E+T   NG  +    S  K+D + TG+++A+ +
Sbjct: 2031 LDLEITLEDNGNKEAKVDSNTKEDDEITGLINAISS 2066


>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 157  LYGLPCLCVVIPVQGHEKHFXLISDILKIC 68
            LY   C CVV+ +   E    ++SD+ K C
Sbjct: 992  LYETVCACVVLKLVNRETEKSMLSDVEKWC 1021


>SB_55753| Best HMM Match : CbiQ (HMM E-Value=1.7)
          Length = 448

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 130 VIPVQGHEKHFXLISDILKICQIPL 56
           V+P+Q + +H  + + +L +C +PL
Sbjct: 43  VVPLQAYRRHHPIQAQVLFLCTLPL 67


>SB_36139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 416 QILFLAIELTTSSNGALKVGFTSEKKKDSKSTGMLDALKTSCT 288
           Q+LF  +E  +   G  K+ F    KKD K   +L+ ++ SCT
Sbjct: 355 QLLFSELEHGSRPVGRPKLRFKDILKKDLKIGCVLEVVELSCT 397


>SB_42821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 386 TSSNGALKVGFTSEKKKDSKSTGMLDALKTSCTEYTNSGPTPSPGIRVHLIRPSFVALGC 207
           T+S+    +GF+  +    + T + DAL    +E T S  TP     + L RP   AL C
Sbjct: 75  TTSHPTDPIGFSEAQLSVIRKT-VSDALAIVASEGTESFSTPGSAFPLGLDRPLDEALEC 133

Query: 206 S 204
           +
Sbjct: 134 T 134


>SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1209

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 244 TLIPGDGVGPELVYSVQEVFKASSIPVD 327
           T+IPGDG GP + + +  V  +  I +D
Sbjct: 627 TVIPGDGEGPVISHVINFVNTSGPITID 654


>SB_10370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 247 LIPGDGVGPELVYSVQEVFKA 309
           +IPGDG+GPE+    ++   A
Sbjct: 7   VIPGDGIGPEVTEQAKKALNA 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,045,294
Number of Sequences: 59808
Number of extensions: 301834
Number of successful extensions: 748
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)