Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P21
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical pr...    77   7e-15
Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical pr...    51   4e-07
Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical pr...    43   8e-05
AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical ...    40   5e-04
AC084158-18|AAK68583.1|  300|Caenorhabditis elegans Hypothetical...    30   0.59 
AF021905-1|AAB84394.1|  358|Caenorhabditis elegans presenilin pr...    28   3.1  
AF000265-8|AAB52948.1|  358|Caenorhabditis elegans Homolog of pr...    28   3.1  
U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    27   4.1  
AC006695-9|AAF39977.1|  453|Caenorhabditis elegans Hypothetical ...    27   7.2  
U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak k...    26   9.5  
U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak k...    26   9.5  
AF101318-1|AAC69342.2|  356|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical
           protein C37E2.1 protein.
          Length = 379

 Score = 76.6 bits (180), Expect = 7e-15
 Identities = 35/83 (42%), Positives = 57/83 (68%)
 Frame = +1

Query: 160 SVNTERNVRFAPIGSLQPNATKEGRIKCTLIPGDGVGPELVYSVQEVFKASSIPVDFESF 339
           +VN   + +++ I + +P      ++K T+IPGDGVGPEL+Y+VQ++ K + IP++FE  
Sbjct: 19  AVNAASSRQYS-ITAPRPPTELNQKLKVTIIPGDGVGPELIYTVQDIVKQTGIPIEFEEI 77

Query: 340 FFSEVNPTLSAPLEDVVNSIAKN 408
           F SEV+ T S+ +E+ V SI +N
Sbjct: 78  FLSEVHYTRSSSIENAVESIGRN 100


>Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical
           protein F35G12.2 protein.
          Length = 396

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
 Frame = +1

Query: 100 NVFRALVQGSQHIGKGVHTSSVNTERNVRF-APIGSLQPNATK----EGRIKCTLIPGDG 264
           NV    ++ S+++ +    ++      +RF +P+  LQ N TK     GR   T++PGDG
Sbjct: 4   NVLGHTLRSSKNVVQKAFVATSPNSDMLRFRSPV--LQTNTTKLARYGGRHNVTVLPGDG 61

Query: 265 VGPELVYSVQEVFKASSIPVDFESFFFSEVNPTLSAPLEDVVNSIAKNKI 414
           +GPE+++ V+ +  A   PVDFE    +      S  L + + +I +N +
Sbjct: 62  IGPEMLHHVERILSAVQAPVDFEVVNLTS-KEDASEDLAEAITAIKRNGV 110


>Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical
           protein F43G9.1 protein.
          Length = 358

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 16/32 (50%), Positives = 26/32 (81%)
 Frame = +1

Query: 238 KCTLIPGDGVGPELVYSVQEVFKASSIPVDFE 333
           + TLIPGDG+GPE+  SVQ++F+A+  P+ ++
Sbjct: 26  RVTLIPGDGIGPEISASVQKIFEAADAPIAWD 57


>AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical
           protein C30F12.7 protein.
          Length = 373

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +1

Query: 199 GSLQPNATKEGRIKCTLIPGDGVGPELVYSVQEVFKASSIPVDFESFFFSEVNPTLSAPL 378
           G   P A   GR     +PGDG+GPE++  ++ +F     PV+FE    S  +  L   +
Sbjct: 24  GHRLPLAKYGGRHTVCALPGDGIGPEMIAHIRNIFSFCHAPVNFEEVQVS--SSLLDGDM 81

Query: 379 EDVVNSIAKNKI 414
           +  + +I +N +
Sbjct: 82  DAAMLAIERNGV 93


>AC084158-18|AAK68583.1|  300|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.9 protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -3

Query: 302 KTSCTEYTNSGPTPSPGIRVHLIRPSFVALGCSEPMGAKRT 180
           KTS TE TN GP P PG       PS   +    P   K T
Sbjct: 128 KTSTTEKTNPGPAPGPGPGPFASSPSPKDVTAEAPTPPKTT 168


>AF021905-1|AAB84394.1|  358|Caenorhabditis elegans presenilin
           protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +1

Query: 259 DGVGPELVYSV---QEVFKASSIPVDFESFFF 345
           + +G  LVYSV   Q + +A SIPV   +FFF
Sbjct: 94  NSIGILLVYSVFHFQRIAEAQSIPVSVPTFFF 125


>AF000265-8|AAB52948.1|  358|Caenorhabditis elegans Homolog of
           presenilin protein 1 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +1

Query: 259 DGVGPELVYSV---QEVFKASSIPVDFESFFF 345
           + +G  LVYSV   Q + +A SIPV   +FFF
Sbjct: 94  NSIGILLVYSVFHFQRIAEAQSIPVSVPTFFF 125


>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/72 (20%), Positives = 26/72 (36%)
 Frame = +3

Query: 9   AQRRSKNISCKN*PFSKGIWQILRMSLISXKCFSCPCTGITTHRQGSPYKFGKH*EKCTF 188
           AQ+   +  C N      +W ++     + +  +C C     H     Y +G   +    
Sbjct: 559 AQQCDNSDGCFNENVCCAVWGLMGECRKNTRYMACNCRVSCGHCYPEDYNYGSCVDYHRS 618

Query: 189 CAHWFTATQCDK 224
           CA W    +C K
Sbjct: 619 CAGWARVGECQK 630


>AC006695-9|AAF39977.1|  453|Caenorhabditis elegans Hypothetical
           protein W06H8.2 protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 356 FTSEKKKDSKSTGMLDALKTSCTEYTNSGPTPSPGIRV 243
           F + +K+   STG L  LKT+  E+ + G T    I +
Sbjct: 230 FDAIRKEIPASTGFLIGLKTNSVEFQSEGTTVDDAIEM 267


>U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform b protein.
          Length = 422

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 352 LRKRRKTQNQRECLMP*KPPVLNILTQVLRHPPE*GYT*YDLLLSHWV 209
           L KRR+    RE  +  +  V   +    RHPPE  +   +   SHWV
Sbjct: 5   LEKRREQLEIREKALKQRMKVEQAVLDSARHPPEDVHQWSEHHTSHWV 52


>U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform a protein.
          Length = 516

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 352 LRKRRKTQNQRECLMP*KPPVLNILTQVLRHPPE*GYT*YDLLLSHWV 209
           L KRR+    RE  +  +  V   +    RHPPE  +   +   SHWV
Sbjct: 99  LEKRREQLEIREKALKQRMKVEQAVLDSARHPPEDVHQWSEHHTSHWV 146


>AF101318-1|AAC69342.2|  356|Caenorhabditis elegans Hypothetical
           protein Y73C8C.4 protein.
          Length = 356

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 401 AIELTTSSNGALKVGFTSEKKKDSKSTGMLDALKT 297
           +IELTT      +   T EKK+ SK T + D LKT
Sbjct: 221 SIELTTHEK-TTEAWRTFEKKRWSKPTSVCDELKT 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,489,767
Number of Sequences: 27780
Number of extensions: 227488
Number of successful extensions: 572
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)