Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P19
         (579 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0L8M0 Cluster: Response regulator receiver modulated C...    34   2.8  
UniRef50_Q4XCU2 Cluster: Putative uncharacterized protein; n=1; ...    33   3.7  
UniRef50_Q891G5 Cluster: Type IV prepilin leader peptidase pilD;...    32   8.5  
UniRef50_Q1ACG8 Cluster: Putative uncharacterized protein orf98a...    32   8.5  
UniRef50_Q6L2C0 Cluster: Heteropolysaccharide repeat unit export...    32   8.5  

>UniRef50_A0L8M0 Cluster: Response regulator receiver modulated CheW
           protein; n=3; cellular organisms|Rep: Response regulator
           receiver modulated CheW protein - Magnetococcus sp.
           (strain MC-1)
          Length = 312

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 20/45 (44%), Positives = 24/45 (53%)
 Frame = -1

Query: 471 TNLAFTQTFNRFLLSNLTVYLRD*AHYGINRFKVMSINEVFDQTT 337
           TNLAFT       +  LT YL D   YGIN FK++ + E   Q T
Sbjct: 13  TNLAFTNQ-----MEMLTFYLSDHQQYGINVFKIIEVIETPKQVT 52


>UniRef50_Q4XCU2 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 91

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 48  LIKNFDNLFIRTLFVFLLFCHY*LYFGGSFIVLYFFKINFL 170
           L   F N F+    ++ LF H+ L +   FI L  +KIN++
Sbjct: 36  LFHTFINFFLNFFMIYYLFFHFLLLYSLIFIFLQIYKINYI 76


>UniRef50_Q891G5 Cluster: Type IV prepilin leader peptidase pilD;
           n=1; Clostridium tetani|Rep: Type IV prepilin leader
           peptidase pilD - Clostridium tetani
          Length = 263

 Score = 32.3 bits (70), Expect = 8.5
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +1

Query: 58  ISIIYSYGPCLYFYYFVIINYILEEVSLCCIFLKLISYIEI---FVTYELFLLLKLITGV 228
           IS I   G C Y    + I Y+L E  +  +FL L S  ++   F+ Y +F+   +I  V
Sbjct: 67  ISYIKLKGKCRYCNIKISIQYLLIETFIGIMFLGLHSKYQLSFEFIKYSIFICFLIIVSV 126

Query: 229 TFFSNIF 249
             F  ++
Sbjct: 127 IDFKTMY 133


>UniRef50_Q1ACG8 Cluster: Putative uncharacterized protein orf98a;
           n=1; Chara vulgaris|Rep: Putative uncharacterized
           protein orf98a - Chara vulgaris (Common stonewort)
          Length = 98

 Score = 32.3 bits (70), Expect = 8.5
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 64  IIYSYGPCLYFYYFVIINYILEEVSLCCIFLKLISYIEIFVTYELFLLLKLI 219
           I+Y Y   +Y     II +    V  C +FL L+  + +F+TY    L K I
Sbjct: 38  ILYLYYIIIYIIVLFIIKHRKINVFYCYLFLFLLFTLYVFITYNEIYLFKYI 89


>UniRef50_Q6L2C0 Cluster: Heteropolysaccharide repeat unit export
           protein; n=1; Picrophilus torridus|Rep:
           Heteropolysaccharide repeat unit export protein -
           Picrophilus torridus
          Length = 500

 Score = 32.3 bits (70), Expect = 8.5
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +3

Query: 126 GGSFIVLYFFKINFLH*DLRNL*IIFTVEAYYRSYIFL*HISTLISY 266
           G +FI+LY+F  NF+  DL+ +  IF    +    +F  ++ T++SY
Sbjct: 404 GTNFIILYYFARNFVKYDLKIIFKIFASSIFMSIILF--YLGTMLSY 448


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,382,284
Number of Sequences: 1657284
Number of extensions: 9191871
Number of successful extensions: 19002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18976
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39987623712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)