Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P19
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   0.86 
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    28   1.1  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    26   3.5  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    26   4.6  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   8.0  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 11/28 (39%), Positives = 23/28 (82%)
 Frame = -3

Query: 328  IIPS*LYLGKATNVLSFAHKKYEINVEI 245
            I+PS LY GKA++++SF++K ++  +++
Sbjct: 3513 ILPS-LYKGKASDLISFSNKSFQNQIKL 3539


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +1

Query: 40  FEN*LKISIIYSYGPCLYFYYFVIINYILEEVSLCCIFLKLISYIEIFVTYELFLLLKL 216
           F+    +  +  YG  +Y Y  +I+ ++   V  CC+     ++  +F+ + + +L+KL
Sbjct: 123 FQKIFALGYLRWYGLGVYLYSILILLFLSHCVLRCCLSNWSWTHRAMFILHSMVILMKL 181


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 448 FQSFPIVKFNCVFEGLSSLWDK*IQSY 368
           F  +PI+KF C FE + ++ D+  QS+
Sbjct: 556 FNEYPILKFRCDFENVRTM-DRFYQSF 581


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 120 YFGGSFIVLYFFKINFLH*DLRNL*IIFTVEAYYRSYIFL*HISTLISY 266
           +F   +I    FK+N L   LRN  I F   A   +YI +  +  LISY
Sbjct: 407 FFSVGYIAKSTFKLNPLR--LRNQYIYFLTNAQVINYITILAVPQLISY 453


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 272 VSKTQYISSLTQIKL*RNDGLVVVWSNTS 358
           + K  YIS  TQ+     DGLV VWS +S
Sbjct: 552 ILKLIYISQGTQVVSAAADGLVKVWSLSS 580


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 48  LIKNFDNLFIRTLFVFLLFCHY*LYFGGSFIVLYFFKINF 167
           L+K    LF+ + FV+ L   + L+   SF+V +    +F
Sbjct: 345 LLKKLLTLFVLSFFVYPLVQEFCLFLACSFVVSFLLHGSF 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,138
Number of Sequences: 5004
Number of extensions: 42783
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)