Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P19
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    30   1.2  
12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385...    28   6.2  
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406...    28   6.2  
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319...    28   6.2  

>08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,
            4485434-4485660,4486238-4486324,4486408-4487114,
            4487206-4487270,4487323-4487837,4487898-4487991,
            4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 64   IIYSYGPCLYFYYFVIINYILEEVSLCCIFLKLISYI 174
            I+Y   P L   +F+ I+  + ++S C   + LISYI
Sbjct: 955  ILYQLAPALELPWFLSISQSINQISHCFTIVSLISYI 991


>12_01_0486 +
           3854889-3855014,3855897-3856089,3856206-3856310,
           3856541-3856629,3856720-3856872,3857047-3857181,
           3857293-3857459,3858193-3858287,3858495-3858868,
           3859101-3859374,3859464-3859531
          Length = 592

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 60  FDNLFIRTLFVFLLFCHY*LYFGGSFIVLYF 152
           F ++FI   FVF  F +Y +Y+   F++L F
Sbjct: 461 FGSIFIEMYFVFTSFWNYKVYYVYGFMLLVF 491


>11_01_0518 +
           4057428-4057538,4059609-4059801,4059921-4060025,
           4060259-4060347,4060424-4060576,4060754-4060888,
           4061241-4061407,4062129-4062223,4062367-4062740,
           4062903-4063176,4063806-4063822
          Length = 570

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 60  FDNLFIRTLFVFLLFCHY*LYFGGSFIVLYF 152
           F ++FI   FVF  F +Y +Y+   F++L F
Sbjct: 456 FGSIFIEMYFVFTSFWNYKVYYVYGFMLLVF 486


>02_04_0195 +
           20830849-20830950,20831498-20831690,20831800-20831904,
           20832147-20832235,20832316-20832468,20832628-20832762,
           20832849-20833015,20833519-20833613,20833707-20834080,
           20834177-20834599
          Length = 611

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 60  FDNLFIRTLFVFLLFCHY*LYFGGSFIVLYF 152
           F ++FI   FVF  F +Y +Y+   F++L F
Sbjct: 453 FGSIFIEMYFVFTSFWNYKVYYVYGFMLLVF 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,149,778
Number of Sequences: 37544
Number of extensions: 210404
Number of successful extensions: 315
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)