Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P19
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)                 29   3.6  
SB_41295| Best HMM Match : FTCD (HMM E-Value=5.6)                      27   8.4  
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)             27   8.4  

>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 60  FDNLFIRTLFVFLLFCHY*LYFGGSFIVLYFF 155
           F ++FI   F+F  F  Y +Y+   F++L FF
Sbjct: 410 FGSIFIEMYFIFTSFWAYKIYYVFGFMLLVFF 441


>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
          Length = 1297

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 121 ILEEVSLCCIFLKLISYIEIFVTYELFLLLKLITGVTFFS 240
           +L  ++L C+ L +++ +   VTY LF  L+   GV   +
Sbjct: 744 VLATLTLVCMVLSIVALVFFLVTYFLFRQLRTTPGVNLMN 783


>SB_41295| Best HMM Match : FTCD (HMM E-Value=5.6)
          Length = 322

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 55  KISIIYSYGPCLYFYYFVIINYILEEVSLCCIFLKLISYIEIFV 186
           +++I Y YGP L     VI+N+I    S   I+ K + Y E+F+
Sbjct: 3   ELAITYIYGPNLSV--IVILNFITSLFSKLDIYDKPVVYNEVFL 44


>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
          Length = 999

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 109  IINYILEEVSLCCIFLKLISYIEIFVTYELFLLLKLITGV 228
            ++ Y   E +  C+FL L+ Y  I VT+    L K   GV
Sbjct: 903  MVGYYASETTFVCVFLPLLRYFVIPVTFRSSQLDKEEGGV 942


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,890,036
Number of Sequences: 59808
Number of extensions: 279030
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)