Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P19
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    30   1.0  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z77652-13|CAB01120.2|  308|Caenorhabditis elegans Hypothetical p...    27   7.3  
AF016446-5|AAC24163.1|  329|Caenorhabditis elegans Serpentine re...    27   7.3  

>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 58  ISIIYSYGPCLYFYYFVIINYILEE 132
           IS++  Y P L FYYFV+  +I+ +
Sbjct: 505 ISLLIKYRPLLRFYYFVMFRFIMNK 529


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
 Frame = -2

Query: 566 H*TLSLQSRLVLS----DNVVLEVSR--FLTKSLTGQALTWRLRKLSIVSYCQI 423
           H TL   S  VL       VVL + R  F+ K +T +ALT+RLR +++++Y ++
Sbjct: 610 HKTLESDSSPVLKLEDPQKVVLTLGRGMFVLKEMT-EALTYRLRLMAVLNYTRV 662


>Z77652-13|CAB01120.2|  308|Caenorhabditis elegans Hypothetical
           protein C06B3.11 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 52  LKISIIYSY---GPCLYFYYFVIINYILEEVSLCCIFLKLISYIEIFVTYELFLLLKL 216
           L I I YSY   G C+   + V+I++++   +  C     I+Y  +F    L +L+ +
Sbjct: 77  LNIVIDYSYIFGGICIIMLHIVLISFLMISFNRLCAVAFPIAYQTVFGKKWLMILISI 134


>AF016446-5|AAC24163.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein22 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 103 FVIINYILEEVSLCCIFLKLISYIEI----FVTYELFLLLKLITGVTF 234
           F I  + +  VSL   FL L S + I    FVTY  FLL  ++  + F
Sbjct: 11  FRIFTHSIHFVSLPTYFLALFSLVSIKSKVFVTYRYFLLWHVLENLFF 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,674,744
Number of Sequences: 27780
Number of extensions: 227768
Number of successful extensions: 527
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)