Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P18
(575 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 235 7e-61
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 165 7e-40
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 134 1e-30
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 128 9e-29
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 125 9e-28
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 93 4e-18
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 91 2e-17
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 81 2e-14
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 80 3e-14
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 80 4e-14
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 67 2e-13
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 77 4e-13
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 75 2e-12
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 71 3e-11
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 65 1e-09
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 65 1e-09
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 64 2e-09
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 62 7e-09
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 58 1e-07
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 57 3e-07
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 56 6e-07
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 55 1e-06
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 52 1e-05
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 48 1e-04
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 43 0.006
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 42 0.008
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 41 0.018
UniRef50_Q9RH14 Cluster: Putative uncharacterized protein; n=2; ... 35 1.6
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 35 1.6
UniRef50_Q8T248 Cluster: Similar to Dictyostelium discoideum (Sl... 33 4.8
UniRef50_Q1JVH7 Cluster: Putative uncharacterized protein; n=1; ... 32 8.4
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 235 bits (574), Expect = 7e-61
Identities = 112/160 (70%), Positives = 122/160 (76%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 270
RNYDLGNGV+RFSKS+M+HKKA YKF+G TVVVKQIGGEKNGGTRTV L
Sbjct: 30 RNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVPL 89
Query: 271 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 450
K RKSFYPTQ+KIR S G+ FSKHVRR RPNL GTVCILLAGRHAGKR
Sbjct: 90 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 149
Query: 451 XXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAH 570
TGPFAFN+CPLRRIPQRYVIGTST++ LG+FKLP H
Sbjct: 150 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH 189
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 165 bits (401), Expect = 7e-40
Identities = 82/160 (51%), Positives = 101/160 (63%)
Frame = +1
Query: 94 NYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLK 273
N L G+LR+SK++MY ++A+Y+ VK+IGG KNGG RTV LK
Sbjct: 23 NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLK 82
Query: 274 SRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXX 453
K+ YPT+ ++ R +FS+H R TR NLTPGTV ILLAGRH GKR
Sbjct: 83 KSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGL 142
Query: 454 XXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHL 573
TGPFA N+CPLRR+ QRYVIGTS+KVDLG FK+P HL
Sbjct: 143 LLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHL 182
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 134 bits (324), Expect = 1e-30
Identities = 72/167 (43%), Positives = 94/167 (56%), Gaps = 6/167 (3%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTR 258
RN L G+ R+S+S MY +KA+YK V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 259 TVLLKSRKSFYPTQDKIRGR-SHGKS-FSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXX 432
V L+ +YPT+D R SHGK FS+HVR+ R ++TPGT+ I+L GRH GKR
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
Query: 433 XXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHL 573
TGP N PLRR Q++VI TSTK+D+ + K+P HL
Sbjct: 166 KQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHL 212
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 128 bits (309), Expect = 9e-29
Identities = 70/163 (42%), Positives = 89/163 (54%), Gaps = 2/163 (1%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 270
+N+ L GV FS+S+M+HK+ ++K V VK++ GEKNGG R + L
Sbjct: 26 KNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPL 85
Query: 271 KSRKSFYPTQDKIRGR--SHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXX 444
K + YPT+D + + SH K S+ R +TPGTV ILLAG H GKR
Sbjct: 86 KKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQLK 145
Query: 445 XXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHL 573
TGP+ N CPLRRI Q YVI TSTK+DL KLP L
Sbjct: 146 TGLLPVTGPYGVNGCPLRRINQIYVIATSTKLDLSKVKLPEGL 188
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 125 bits (301), Expect = 9e-28
Identities = 68/160 (42%), Positives = 88/160 (55%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 270
RN +L G+ R+S+S +Y K+A+YK T K IGG+KNGG R V +
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 271 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 450
+ +YPT+D R ++ K + + R ++TPGTV ILLAG H GKR
Sbjct: 70 QRESRYYPTEDVRRRLANRKK--PGMAKLRSSITPGTVLILLAGAHRGKRVVFLKQLNSG 127
Query: 451 XXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAH 570
TGPF N PLRRIPQ YVI TST +D+ D KLP H
Sbjct: 128 LLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEH 167
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 93.1 bits (221), Expect = 4e-18
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Frame = +1
Query: 214 VVVKQIGGEKNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFS-KHVRRTRPNLTPGTVCI 390
V+ K+IGG+KNGGTR V + FYP + + R H + + K+ + R +L PGT+ I
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQK-RFHRRLVNNKNPPKIRKSLQPGTILI 102
Query: 391 LLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAH 570
LLAG + GKR +GP N PLRR+ Q+ VI TST++D+ + K+P H
Sbjct: 103 LLAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDISNVKVPEH 162
Query: 571 L 573
+
Sbjct: 163 I 163
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 90.6 bits (215), Expect = 2e-17
Identities = 51/119 (42%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Frame = +1
Query: 235 GEKNGGTRTVLLKSRKSF---YPTQD---KIRGRSHGKSFSKHVRRTRPNLTPGTVCILL 396
G + T+ L+K + F Y TQ K+R R K FS HVR+ R ++ PGTV ILL
Sbjct: 42 GLRTPKTKEALVKPKTRFPRSYVTQQGKRKLRLR-RAKCFSNHVRKIRSSIQPGTVLILL 100
Query: 397 AGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHL 573
AG H GKR TGPF +N PLRR+ Q YVI TST++D+ F +P H+
Sbjct: 101 AGPHKGKRVIFLKALKSGLLLVTGPFKYNGVPLRRVNQCYVIATSTRIDISKFDVPKHI 159
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 80.6 bits (190), Expect = 2e-14
Identities = 45/111 (40%), Positives = 57/111 (51%)
Frame = +1
Query: 214 VVVKQIGGEKNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCIL 393
++ K IGG KNGG R V K +YP DK K+ K + RP++ GT+ IL
Sbjct: 22 MIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVIL 80
Query: 394 LAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVDL 546
LAG G R TGP+A N PL R+ QRYVI TST +D+
Sbjct: 81 LAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDV 131
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 80.2 bits (189), Expect = 3e-14
Identities = 37/80 (46%), Positives = 48/80 (60%)
Frame = +1
Query: 334 FSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQR 513
F+ H RR R ++TPG V ILLAGRH KR TGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 514 YVIGTSTKVDLGDFKLPAHL 573
YVI T T++ + + K+P+ L
Sbjct: 146 YVIATKTRIKIKNIKIPSQL 165
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 79.8 bits (188), Expect = 4e-14
Identities = 53/157 (33%), Positives = 74/157 (47%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 270
RN DL GV ++S+S+MYHK+ ++ + V +
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV------------- 58
Query: 271 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 450
+ FYP +D ++ + +K + R ++TPGTV I+LAGR GKR
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 451 XXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKL 561
TGPF N PLRR+ Q YVIGTSTKVD+ L
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTL 153
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 66.9 bits (156), Expect(2) = 2e-13
Identities = 43/112 (38%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Frame = +1
Query: 241 KNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 420
K G + K + P + G SK V R LTPGTV I+LAGRH GKR
Sbjct: 31 KKGEKKPKFTKDTSAKLPKLQR-NGTKFALGHSKTVT-LRKTLTPGTVLIVLAGRHKGKR 88
Query: 421 XXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHL 573
TGP N PLRRI Q +VI TS KV++ K+P H+
Sbjct: 89 VVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHI 140
Score = 30.7 bits (66), Expect(2) = 2e-13
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKK 153
RN+DL GVLRFS SR+ KK
Sbjct: 12 RNFDLSPGVLRFSASRLRLKK 32
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 76.6 bits (180), Expect = 4e-13
Identities = 45/106 (42%), Positives = 55/106 (51%)
Frame = +1
Query: 250 GTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXX 429
G R + K+ K +IR + K K R ++TPGTV I+LAGR AGKR
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 430 XXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPA 567
TGPF N PLRRI QRYVI TSTK+D+ K+ A
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAA 157
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 74.5 bits (175), Expect = 2e-12
Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Frame = +1
Query: 211 TVVVKQIGGEKN--GGTRTVLLKSRKS--FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPG 378
T+ K +G K G R + S+K+ +YP D+ + + K+ H + RP+L PG
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARKT--AHPTKLRPSLQPG 61
Query: 379 TVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVDL 546
T+ ILLAGR GKR TGPF N PLRR+ RYVI TS+ VDL
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVIATSSTVDL 117
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 70.5 bits (165), Expect = 3e-11
Identities = 39/91 (42%), Positives = 48/91 (52%)
Frame = +1
Query: 274 SRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXX 453
S FYP D ++ R + + R ++TPGTV ILLAGR GKR
Sbjct: 49 SAPKFYPADD-VKPRQPSTR-KPNPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGL 106
Query: 454 XXFTGPFAFNACPLRRIPQRYVIGTSTKVDL 546
TGPF N P+RR+ Q YVI TSTKVD+
Sbjct: 107 LLVTGPFKINGVPIRRVNQPYVIATSTKVDI 137
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 65.3 bits (152), Expect = 1e-09
Identities = 34/63 (53%), Positives = 35/63 (55%)
Frame = +1
Query: 358 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTK 537
R L PGTV ILLAGR GKR TGPF N PLRR+ RYVI TS K
Sbjct: 36 RSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRRVNARYVIATSQK 95
Query: 538 VDL 546
VDL
Sbjct: 96 VDL 98
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 65.3 bits (152), Expect = 1e-09
Identities = 36/87 (41%), Positives = 47/87 (54%)
Frame = +1
Query: 286 FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFT 465
+YP++D + K+ ++ R +L PGTV ILLAGR GKR +
Sbjct: 9 WYPSEDVAALKKTRKA--ARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLIS 66
Query: 466 GPFAFNACPLRRIPQRYVIGTSTKVDL 546
GPF N PLRR+ RYVI TSTKV +
Sbjct: 67 GPFKVNGVPLRRVNARYVIATSTKVSV 93
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 64.1 bits (149), Expect = 2e-09
Identities = 30/65 (46%), Positives = 38/65 (58%)
Frame = +1
Query: 352 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 531
+ R +L PG VCILLAG + GKR TGP+A N P+RR+ Y+I TS
Sbjct: 34 KLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGVPVRRVNPAYIIATS 93
Query: 532 TKVDL 546
TKVD+
Sbjct: 94 TKVDV 98
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 62.5 bits (145), Expect = 7e-09
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +1
Query: 325 GKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRI 504
G+ ++ V + R +L PG V ILL G + GKR TGPF+FN PLRR+
Sbjct: 31 GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVLKSGLLLVTGPFSFNGVPLRRV 89
Query: 505 PQRYVIGTSTKV 540
RYVI TST V
Sbjct: 90 NSRYVIATSTNV 101
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 58.0 bits (134), Expect = 1e-07
Identities = 31/70 (44%), Positives = 36/70 (51%)
Frame = +1
Query: 364 NLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVD 543
++TP TV I+L GRH GKR TGP A N PL R+ Q VI T TKVD
Sbjct: 8 SITPQTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVD 67
Query: 544 LGDFKLPAHL 573
+ K HL
Sbjct: 68 ICKVKTSKHL 77
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 56.8 bits (131), Expect = 3e-07
Identities = 29/64 (45%), Positives = 34/64 (53%)
Frame = +1
Query: 355 TRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 534
T + PG V ILL+GR GKR TGPF N PL+R+ YVI TST
Sbjct: 54 TLRKIVPGQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKINGVPLKRVNSAYVIPTST 113
Query: 535 KVDL 546
KVD+
Sbjct: 114 KVDV 117
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 56.0 bits (129), Expect = 6e-07
Identities = 45/151 (29%), Positives = 65/151 (43%)
Frame = +1
Query: 91 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 270
RN L G R+S +Y +K Y V V+K + G+KNGGT V L
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 271 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 450
+ K + + + +F KH + N TP TV I++ G+H +R
Sbjct: 107 QKMKMYL---GSCKAMAKSPAF-KH-EKAVCNSTPETVLIIITGQH--RRVVFLKQLSRG 159
Query: 451 XXXFTGPFAFNACPLRRIPQRYVIGTSTKVD 543
TGP A N L R Q+ V+ TST ++
Sbjct: 160 FLLITGPLALNLVLLYRTHQKSVVITSTTIN 190
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 54.8 bits (126), Expect = 1e-06
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Frame = +1
Query: 217 VVKQIGGEKNGGTRTVLLKSRKSFYPTQDK--IRGRSHGKSFS---KHV--RRTRPNLTP 375
VV G +KN V+ +K P + K I + +G+ + K V R+ R ++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 376 GTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKV 540
G V I+L G+H GKR GP+ N PL+R+ RY+I TST +
Sbjct: 77 GKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 358 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTST 534
R + PG + I+LAGR G+R +GP +N P+RRI RYVI TST
Sbjct: 30 RKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATST 89
Query: 535 KVDL 546
VD+
Sbjct: 90 TVDI 93
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 48.4 bits (110), Expect = 1e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1
Query: 460 FTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPA 567
F GPF+ N P+RRI Q++V+ TSTK+D+ K+PA
Sbjct: 13 FLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPA 48
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 42.7 bits (96), Expect = 0.006
Identities = 23/64 (35%), Positives = 31/64 (48%)
Frame = +1
Query: 355 TRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 534
TRP+L GTV I++ G H GKR GP P+ I Q Y+I TST
Sbjct: 52 TRPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGP----VVPVNEISQDYLIATST 107
Query: 535 KVDL 546
+++
Sbjct: 108 SIEV 111
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 42.3 bits (95), Expect = 0.008
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +1
Query: 346 VRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIG 525
VRRT +L G V ++L G A +R GP + N PL RI +RY++
Sbjct: 22 VRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSINGIPLFRIDERYLLA 79
Query: 526 TSTKVDL 546
TST +DL
Sbjct: 80 TSTVLDL 86
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 41.1 bits (92), Expect = 0.018
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +1
Query: 463 TGPFAFNACPLRRIPQRYVIGTSTKVDL 546
TG F N PLRR+ Q YVI TSTKVD+
Sbjct: 172 TGSFKINGVPLRRVNQAYVIATSTKVDI 199
>UniRef50_Q9RH14 Cluster: Putative uncharacterized protein; n=2;
Zymomonas mobilis|Rep: Putative uncharacterized protein
- Zymomonas mobilis
Length = 390
Score = 34.7 bits (76), Expect = 1.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 309 DLVLSGVE*FPAFQQDCTSASILFTAYLLNHDGWFLG 199
+ LS + F A QD TSA I + YLL H WF G
Sbjct: 339 EYALSDIVYFGALLQDKTSADIAYYDYLLGHSRWFSG 375
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 34.7 bits (76), Expect = 1.6
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 355 TRPNLTPGTVCILLAGRHAGKR 420
++P + PG VCI+L GRHAGK+
Sbjct: 2 SQPIIKPGLVCIVLQGRHAGKK 23
>UniRef50_Q8T248 Cluster: Similar to Dictyostelium discoideum (Slime
mold). Homeobox-containing protein; n=2; Dictyostelium
discoideum|Rep: Similar to Dictyostelium discoideum
(Slime mold). Homeobox-containing protein - Dictyostelium
discoideum (Slime mold)
Length = 1723
Score = 33.1 bits (72), Expect = 4.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 86 NRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPS 217
N G TSE + ++ + G T +++ + +R R SPR QP+
Sbjct: 1569 NNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPT 1612
>UniRef50_Q1JVH7 Cluster: Putative uncharacterized protein; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: Putative
uncharacterized protein - Desulfuromonas acetoxidans DSM
684
Length = 181
Score = 32.3 bits (70), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 246 WRHSYSPAEKQEIILPHSGQDQGSFSWQE 332
W + PA +Q ++L +SG+D GS W +
Sbjct: 66 WAIQFDPAGRQYVVLSNSGEDAGSEDWTD 94
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,018,075
Number of Sequences: 1657284
Number of extensions: 11815374
Number of successful extensions: 31244
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31221
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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