Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P17
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 2.9
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 26 2.9
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 5.0
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.7
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 25 6.7
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 6.7
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 6.7
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 6.7
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 24 8.8
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 24 8.8
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 24 8.8
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 143 VFLEKTSKGIKQYNIRPIDPWFISSLDVLADEDMRLLFH 259
+FLE+ ++ +K+Y + ++P + VL+D M LL H
Sbjct: 3 LFLEEHAEYLKRYLEQALEPISDADASVLSDYAMALLRH 41
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 319 VNTKIKDFLVLQSGHGHIIKVKQQTHILVSQD 224
+NT DFL +Q ++ K+Q +++SQ+
Sbjct: 521 INTNHPDFLGVQGAMAVVLSRKEQNRLMLSQE 552
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 5.0
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -1
Query: 225 TSKDDMNQGSMGRILYCLMPLLVFSRNTFVD*PKQSKSVMSHGTNNDPSQKMLLTNVRKN 46
TSK +N +L +P S+ +F D +++ +NDP+ +ML N +
Sbjct: 320 TSKVVLNLNDPKLLLQPQLPKKEDSQRSFADTHQRNSLAWKFNISNDPAYEMLKQNHQSK 379
Query: 45 I 43
+
Sbjct: 380 V 380
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 264 LK*NNKRISSSARTSKDDMNQGSMGR 187
LK +N+R+ + RT K ++N S+G+
Sbjct: 224 LKNDNERLENEHRTEKLNVNANSLGK 249
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 90 NDPSQKMLLTNVRKNII 40
N P+ K LLTN R NI+
Sbjct: 123 NTPASKRLLTNERSNIL 139
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 120 SKSVMSHGTNNDPSQKMLLTNVRKNIIFTGFILH 19
+K+ MSH +N ++ L ++KN + TG H
Sbjct: 161 AKAYMSHISNLRKKSRLNLQEIQKNSLHTGNTSH 194
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 29 NPVKIIFFLT-FVKSIFCDGSLLVPCDMTDL 118
NP+ I +T F+K + C+ + PCD+ ++
Sbjct: 332 NPLSIQRTITHFIKKLVCNECSMHPCDIEEI 362
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 201 GSMGRILYCLMPLLVFSRNT 142
GS RI+Y L+ L+FSR T
Sbjct: 579 GSFERIVYALLRTLLFSRAT 598
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 419 FRRTIWISRLIL*QCFLQYLGQPLSSIQLI 330
FR+ IW + + C +Q L +SS +LI
Sbjct: 152 FRQEIWALKTLSHPCVVQLLNYYVSSAELI 181
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 8.8
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -1
Query: 375 FPTIFRSAFVFNTTDLVFVSIRKSKIF---WFFNPVTDTLLK*NNKRIS-SSARTSK 217
FP + S+FVF + + +++S++F W+ P+ D LL RI S+R K
Sbjct: 131 FPLLLLSSFVFILPYMPSLRLQESEVFSAQWY--PLADLLLPECQTRIQIDSSRALK 185
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 162 LVFSRNTFVD*PKQSKSVMSHGTNNDPSQKMLLTNVR 52
++ ++N F+ PK S + T P ++LL NVR
Sbjct: 50 VIGAQNDFLTVPKHSGKKVPIDTTPTPRDEILLENVR 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,770
Number of Sequences: 5004
Number of extensions: 40322
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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