Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P17
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0488 - 8824980-8825267,8825364-8827775 28 3.8
07_03_0264 - 15958690-15958910,15959410-15959484,15959547-159597... 27 5.0
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438... 27 5.0
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 27 6.6
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 27 6.6
05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,954... 27 6.6
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 27 8.7
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 161 LFSQEIPSSTDPNNPNLSCRMVPTMTRHKKCS 66
+FS SS P++ +L PT+ H+ CS
Sbjct: 156 IFSSPSQSSASPSSKSLESNQSPTLNDHQHCS 187
>07_03_0264 -
15958690-15958910,15959410-15959484,15959547-15959775,
15960312-15960587,15962109-15962369,15962632-15962781,
15963555-15963591,15963958-15964024,15964228-15964291,
15964643-15964812,15965046-15965124,15965576-15965733,
15965862-15966030,15966531-15966602,15966977-15967018,
15967245-15967488,15968782-15968963
Length = 831
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -1
Query: 330 LVFVSIRKSKIFWFFNPVTDTLLK*NNKRISSSARTSKDDMNQGSMGRILYCLMPLLVFS 151
L ++ +++ + F TD L+ IS RT+ + +NQ +L CL P L S
Sbjct: 727 LNYLDRQEANMLIFVRAATDLLMPLPTSFISVRVRTAGEVVNQNLRLLVLVCLQPQLHAS 786
Query: 150 R 148
+
Sbjct: 787 K 787
>06_03_1298 +
29141578-29141623,29142129-29142250,29143818-29143874,
29143983-29144138,29144220-29144304,29144575-29144665,
29144807-29144971,29145064-29145186,29145334-29145409,
29145513-29145642,29145951-29147824,29148339-29148529,
29148697-29148860,29149164-29149275,29149276-29149294
Length = 1136
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 161 LFSQEIPS-STDPNNPNLSCRMVPTMTRHKKCS*QT*EKI 45
+ ++EIPS ST P+ N + + P + R+K CS EK+
Sbjct: 722 VLTEEIPSCSTSPSTANGNHLLQPILGRNKHCSMINTEKV 761
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -3
Query: 316 NTKIKDFLVLQSGHGHIIKVKQQTHILVSQ 227
N K+ D LVL+ H HI+++ + +H++VSQ
Sbjct: 182 NYKVAD-LVLE--HNHILQLPETSHLMVSQ 208
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 396 SPNSITMFPTIFRSAF--VFNTTDLVFVSIRKSKIFW 292
+P + M T+F + VFNT DLV K++ FW
Sbjct: 402 TPCKVVMSGTLFHNHVKEVFNTLDLVRPGFLKTETFW 438
>05_03_0194 +
9547626-9547715,9549235-9549311,9549493-9549564,
9549648-9549719,9550047-9550118,9550199-9550225,
9550226-9550297,9550382-9550453,9550897-9550968,
9551047-9551121,9551226-9551297,9551384-9551449,
9551544-9551609,9551683-9551727,9551822-9551886,
9551971-9552350,9552419-9552545,9552688-9552846,
9552929-9553047,9553182-9553392,9553582-9553762,
9553845-9553995,9554086-9554448
Length = 901
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -3
Query: 169 AFTCFLKKYLRRLTQTIQICHVAWYQQ*PVTKNALNKRKKK 47
+FT + Y R+++ H+ W P +N + KR+ K
Sbjct: 483 SFTAVNRSYTARVSKNFLEIHLFWADFTPTVRNGVPKRRSK 523
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 149 LEKTSKGIKQYNIRPIDPWFISSL 220
L + S+ +K ++ P +PW +SSL
Sbjct: 11 LAQRSERVKSVDLHPTEPWILSSL 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,850,128
Number of Sequences: 37544
Number of extensions: 228338
Number of successful extensions: 485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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