Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P17
(435 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35577| Best HMM Match : RVP (HMM E-Value=3e-05) 30 0.95
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 30 0.95
SB_21103| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 30 0.95
SB_53100| Best HMM Match : HMD (HMM E-Value=2.8) 28 2.9
SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_27499| Best HMM Match : RVT_1 (HMM E-Value=9.2e-39) 27 6.7
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36) 27 8.8
SB_28049| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-18) 27 8.8
>SB_35577| Best HMM Match : RVP (HMM E-Value=3e-05)
Length = 349
Score = 29.9 bits (64), Expect = 0.95
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +2
Query: 125 LGQSTKVFLE-KTSKGIKQYNIRPI-----DPWFISSLDVLADEDMRLLFHFNNVSVTGL 286
LG+ +K FL T KG+ QYN P F S++D + ++ + +++ +TG
Sbjct: 279 LGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQSTIDTILKGIDGVVCYIDDILITGR 338
Query: 287 KNQK 298
NQK
Sbjct: 339 NNQK 342
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 29.9 bits (64), Expect = 0.95
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +2
Query: 125 LGQSTKVFLE-KTSKGIKQYNIRPI-----DPWFISSLDVLADEDMRLLFHFNNVSVTGL 286
LG+ +K FL T KG+ QYN P F S++D + ++ + +++ +TG
Sbjct: 1195 LGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQSTIDTILKGIDGVVCYIDDILITGR 1254
Query: 287 KNQK 298
NQK
Sbjct: 1255 NNQK 1258
>SB_21103| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 366
Score = 29.9 bits (64), Expect = 0.95
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +2
Query: 125 LGQSTKVFLE-KTSKGIKQYNIRPI-----DPWFISSLDVLADEDMRLLFHFNNVSVTGL 286
LG+ +K FL T KG+ QYN P F S++D + ++ + +++ +TG
Sbjct: 136 LGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQSTIDTILKGIDGVVCYIDDILITGR 195
Query: 287 KNQK 298
NQK
Sbjct: 196 NNQK 199
>SB_53100| Best HMM Match : HMD (HMM E-Value=2.8)
Length = 159
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Frame = +2
Query: 125 LGQSTKVFLE-KTSKGIKQYNIRPI-----DPWFISSLDVLADEDMRLLFHFNNVSVTGL 286
LG+ +K FL T KG+ QYN P F S++D + ++++ +++ +TG
Sbjct: 19 LGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQSTIDTILKGIDGVVYYIDDILITGR 78
Query: 287 KNQK 298
+Q+
Sbjct: 79 SDQE 82
>SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 185 IRPIDPW--FISSLDVLADEDMR-LLFHFNNVSVTGLKNQKIFDFRIDTKTKSVVLK 346
I + W F++ + D R + F F+N T +KN KI D+R++ + S +K
Sbjct: 652 IEAVRKWRHFLAGRHFTLETDQRSVAFMFDNRKRTKVKNNKIQDWRLELASFSYTVK 708
>SB_27499| Best HMM Match : RVT_1 (HMM E-Value=9.2e-39)
Length = 872
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +2
Query: 125 LGQSTKVFLE-KTSKGIKQYNIRPI-----DPWFISSLDVLADEDMRLLFHFNNVSVTGL 286
LG+ +K FL T KG+ QYN P F S++D + ++ + +++ +TG
Sbjct: 194 LGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQSTIDTILKSIDGVVCYIDDILITGR 253
Query: 287 KNQK 298
+Q+
Sbjct: 254 NDQE 257
>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +2
Query: 125 LGQSTKVFLE-KTSKGIKQYNIRPI-----DPWFISSLDVLADEDMRLLFHFNNVSVTGL 286
LG+ +K FL T KG+ QYN P F S++D + ++ + +++ +TG
Sbjct: 725 LGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQSTIDTILKSIDGVVCYIDDILITGR 784
Query: 287 KNQK 298
+Q+
Sbjct: 785 NDQE 788
>SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)
Length = 924
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 185 IRPIDPW--FISSLDVLADEDMR-LLFHFNNVSVTGLKNQKIFDFRIDTKTKSVVLK 346
I + W F++ + D R + F F+N T +KN KI D+R++ + S +K
Sbjct: 486 IEAVRKWRHFLAGRHFTLETDQRSVAFMFDNRKRTKVKNNKIQDWRLELASFSHTVK 542
>SB_28049| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-18)
Length = 346
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 29 NPVKIIFFLTFVKSIFCDGSLLVPCDMTDLDCLGQSTKVFLEKTSKGIKQYN 184
NP ++ V+ I + +VPC ++ + TKV +T GI+ +N
Sbjct: 138 NPTGVVPMTKQVRCILLVAAWMVPCGLSAFYLVFPYTKVVNNQTICGIENFN 189
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,401,258
Number of Sequences: 59808
Number of extensions: 287175
Number of successful extensions: 760
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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