Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P17
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical pr...    31   0.36 
AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U41036-5|AAV28332.1|  475|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei...    27   7.8  

>U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical
           protein F56F10.4 protein.
          Length = 958

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +2

Query: 23  NMNPVKIIFFLTF-VKSIFCDGSLLVPCDMTDLDCLGQSTKVFLEKTSKGIKQYNIRPID 199
           N   ++ IFF++  +  + CDG L++P  + D    G  TK       K   ++N     
Sbjct: 78  NKARIEHIFFISSNIALVLCDGQLIIPIHIKD----GVITK-------KEELRFNENHKS 126

Query: 200 PWFISSLDVLADEDMRLLFHFNN 268
            W I+ +  L+D+   L+F  NN
Sbjct: 127 KWDITHVQKLSDDTFALVFSMNN 149


>AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical
           protein T06A1.5 protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -1

Query: 207 NQGSMGR-ILYCLMPLLVFSRNTFVD 133
           N  S+G  +L+C++ + +FSRN+F D
Sbjct: 4   NNASLGVFVLFCILFVYIFSRNSFDD 29


>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
           protein F54C8.3 protein.
          Length = 1027

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +2

Query: 212 SSLDVLADEDMRLLFHFNNVSVTGLKNQKIFDFRIDTKTKSVVLKTKADLNIVGNIVIEL 391
           SSL   A   +RLLF FN  S++    ++ ++ +ID        KTKA    +GN+++E+
Sbjct: 304 SSLWDTALRYIRLLFGFNLYSISLETTKRNWEEQIDNLHSLFDTKTKAVK--IGNVLLEM 361


>U41036-5|AAV28332.1|  475|Caenorhabditis elegans Hypothetical
           protein T14E8.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +2

Query: 23  NMNPVKIIFFLTFVKSIF--C-DGSLLVPC-DMTDLDCLGQSTKVFLEKTSKGIKQYNIR 190
           NMNP+++IF +T    +   C   S ++PC D   + C   S K  LE+  K +  Y   
Sbjct: 11  NMNPIEVIFNITTEAKLMHTCRTYSRILPCFDQKMVQCGKPSEKTQLER-GKRLHSYLCA 69

Query: 191 P 193
           P
Sbjct: 70  P 70


>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
           protein.
          Length = 1027

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +2

Query: 212 SSLDVLADEDMRLLFHFNNVSVTGLKNQKIFDFRIDTKTKSVVLKTKADLNIVGNIVIEL 391
           SSL   A   +RLLF FN  S++    ++ ++ +ID        KTKA    +GN+++E+
Sbjct: 304 SSLWDTALRYIRLLFGFNLYSISLETTKRNWEEQIDNLHSLFDTKTKAVK--IGNVLLEM 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,766,374
Number of Sequences: 27780
Number of extensions: 224022
Number of successful extensions: 551
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)