Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P16
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...   120   2e-28
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    26   4.1  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   5.4  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    25   7.2  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  120 bits (288), Expect = 2e-28
 Identities = 55/120 (45%), Positives = 82/120 (68%), Gaps = 4/120 (3%)
 Frame = +3

Query: 303 KESKDPFDSMPKGSFNMDDFKRFYSNEE-EAKSIPYFWEKFDPEHYSIWYCQYKYPEELA 479
           K  K P  S P GSF+++++KR YSN++  + ++P+F+E FDPE+YS+W   Y YPE+L 
Sbjct: 249 KPPKHPLASAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLK 308

Query: 480 K-VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHEL--AFPLSPDW 650
           + VFM+ NLI G FQRL+  RK  F    + G + D+TI+G +V +GH+   AF ++PDW
Sbjct: 309 QPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFDVAPDW 368


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 604 HTPEMVESLSP---PKRQTEAKACLRILSRRWNMPVIRL 497
           H P  V+ L+    P    E   CL IL + WN PV+ L
Sbjct: 82  HDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 313 KTRLTRCQRGLSIWMTSSVSILTKRRRNRFLTSG 414
           K  +   +RG+SI    +VS +   RRNR L  G
Sbjct: 150 KLTVVNAERGISIHKDKNVSDIFIMRRNRLLCCG 183


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 616 PRQTHTPEMVESLSPPKRQTEAKACLRILSRRWNMPVIRLQLMNTLASSSGYL 458
           PR  HT  + E++       +A+A LRIL RR       L+  +   + + YL
Sbjct: 397 PRPEHTGSVKEAIDLWHSTHDAEASLRILPRRMIAESSILETWSRSGNQTDYL 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,766
Number of Sequences: 5004
Number of extensions: 43057
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)