Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P16
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                 109   3e-24

>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score =  109 bits (261), Expect = 3e-24
 Identities = 46/89 (51%), Positives = 68/89 (76%), Gaps = 3/89 (3%)
 Frame = +3

Query: 342 SFNMDDFKRFYSNEE-EAKSIPYFWEKFDPEHYSIWYCQYK--YPEELAKVFMSCNLITG 512
           S N+D +K+ YSNE+ E+K+IPYFWE FD E YS+W+ +YK  Y ++L  VFM+CNL+ G
Sbjct: 2   SMNLDAWKKVYSNEDTESKAIPYFWENFDKEGYSLWFLEYKEEYEKDLGMVFMACNLVGG 61

Query: 513 MFQRLDKMRKQAFASVCLFGGDNDSTISG 599
           M QRL+K+ K  F S+C+FG +++ +I+G
Sbjct: 62  MIQRLEKLVKNGFGSICIFGENHNCSIAG 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,458,293
Number of Sequences: 59808
Number of extensions: 370268
Number of successful extensions: 1115
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)