Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P16
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical pr...   218   2e-57
Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical pr...   218   2e-57
Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical p...   212   2e-55
Z81528-6|CAB04285.1|  633|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF039717-3|AAK82917.1|  530|Caenorhabditis elegans Abnormal daue...    28   6.6  
AF020344-1|AAB84392.1|  530|Caenorhabditis elegans fork head-rel...    28   6.6  
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein...    27   8.7  
AF153275-1|AAD54940.1|  301|Caenorhabditis elegans transcription...    27   8.7  
AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF003145-2|AAB57715.2|  301|Caenorhabditis elegans Runt related ...    27   8.7  
AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe...    27   8.7  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    27   8.7  
AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe6...    27   8.7  
AB027412-1|BAA77765.1|  301|Caenorhabditis elegans RNT-1 protein.      27   8.7  

>Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical
           protein F17C11.9b protein.
          Length = 373

 Score =  218 bits (533), Expect = 2e-57
 Identities = 104/211 (49%), Positives = 135/211 (63%), Gaps = 1/211 (0%)
 Frame = +3

Query: 21  LLHAFQHVLDPTVRSKLVNVQRWFLTVGHQPQVSSVVGEPVLCLAPPVFDPKKYQDLTHX 200
           LL AFQ+VLD   R  +VNV RWF TV +QP V  V+GE  L  +   F+  K+ +L+  
Sbjct: 121 LLPAFQYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTELS-- 178

Query: 201 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKESKDPFDSMPKGSFNMDDFKRFYSN 380
                                             ++SKDPF  MPKG+F +D+FKR YSN
Sbjct: 179 -AKVAKSAPKAEKPKKEAKPAAAAAQPEDDEPKEEKSKDPFQDMPKGTFVLDNFKRSYSN 237

Query: 381 EEEA-KSIPYFWEKFDPEHYSIWYCQYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFAS 557
           E+ A K+IP+FWE FD +++SIW C+YKYPE+L   FMSCNLI GM+QRL+K++K AFAS
Sbjct: 238 EDTATKAIPHFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLINGMYQRLEKLKKNAFAS 297

Query: 558 VCLFGGDNDSTISGVWVWRGHELAFPLSPDW 650
           + LFG DN+STISG+WVW+G +LAF LSPDW
Sbjct: 298 MILFGTDNNSTISGIWVWKGDKLAFELSPDW 328


>Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical
           protein F17C11.9a protein.
          Length = 398

 Score =  218 bits (533), Expect = 2e-57
 Identities = 104/211 (49%), Positives = 135/211 (63%), Gaps = 1/211 (0%)
 Frame = +3

Query: 21  LLHAFQHVLDPTVRSKLVNVQRWFLTVGHQPQVSSVVGEPVLCLAPPVFDPKKYQDLTHX 200
           LL AFQ+VLD   R  +VNV RWF TV +QP V  V+GE  L  +   F+  K+ +L+  
Sbjct: 146 LLPAFQYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTELS-- 203

Query: 201 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKESKDPFDSMPKGSFNMDDFKRFYSN 380
                                             ++SKDPF  MPKG+F +D+FKR YSN
Sbjct: 204 -AKVAKSAPKAEKPKKEAKPAAAAAQPEDDEPKEEKSKDPFQDMPKGTFVLDNFKRSYSN 262

Query: 381 EEEA-KSIPYFWEKFDPEHYSIWYCQYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFAS 557
           E+ A K+IP+FWE FD +++SIW C+YKYPE+L   FMSCNLI GM+QRL+K++K AFAS
Sbjct: 263 EDTATKAIPHFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLINGMYQRLEKLKKNAFAS 322

Query: 558 VCLFGGDNDSTISGVWVWRGHELAFPLSPDW 650
           + LFG DN+STISG+WVW+G +LAF LSPDW
Sbjct: 323 MILFGTDNNSTISGIWVWKGDKLAFELSPDW 353


>Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical
           protein F17C11.9c protein.
          Length = 365

 Score =  212 bits (517), Expect = 2e-55
 Identities = 100/206 (48%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
 Frame = +3

Query: 36  QHVLDPTVRSKLVNVQRWFLTVGHQPQVSSVVGEPVLCLAPPVFDPKKYQDLTHXXXXXX 215
           Q+VLD   R  +VNV RWF TV +QP V  V+GE  L  +   F+  K+ +L+       
Sbjct: 118 QYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTELS---AKVA 174

Query: 216 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKESKDPFDSMPKGSFNMDDFKRFYSNEEEA- 392
                                        ++SKDPF  MPKG+F +D+FKR YSNE+ A 
Sbjct: 175 KSAPKAEKPKKEAKPAAAAAQPEDDEPKEEKSKDPFQDMPKGTFVLDNFKRSYSNEDTAT 234

Query: 393 KSIPYFWEKFDPEHYSIWYCQYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFG 572
           K+IP+FWE FD +++SIW C+YKYPE+L   FMSCNLI GM+QRL+K++K AFAS+ LFG
Sbjct: 235 KAIPHFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLINGMYQRLEKLKKNAFASMILFG 294

Query: 573 GDNDSTISGVWVWRGHELAFPLSPDW 650
            DN+STISG+WVW+G +LAF LSPDW
Sbjct: 295 TDNNSTISGIWVWKGDKLAFELSPDW 320


>Z81528-6|CAB04285.1|  633|Caenorhabditis elegans Hypothetical
           protein F35E2.7 protein.
          Length = 633

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 375 SNEEEAKSIPYFWEKFDPEHYSIWYCQYKYPEELA 479
           SN ++A  +   W   D EH ++ YC+Y+ P  LA
Sbjct: 406 SNIDDAIRLNNDWNIHDIEHLNVPYCKYETPGPLA 440


>Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical
           protein F59B2.5 protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 289 LMRNPRSPKTRLTRCQRGLSIWMTSSVSILTKRRRNRFLTSGRSL 423
           ++R+P SP+TR     RGLS     S     KR  +  L+  R L
Sbjct: 49  MVRSPGSPRTRDAHKNRGLSAQTAKSSEAEVKRCEDLILSYSRQL 93


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 330 MPKGSFNMDDFKRFYSNE-EEAKSI 401
           +  GS N+D + RFYS+E +E KS+
Sbjct: 60  LSNGSLNLDSYDRFYSSERKEWKSV 84


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 330 MPKGSFNMDDFKRFYSNE-EEAKSI 401
           +  GS N+D + RFYS+E +E KS+
Sbjct: 60  LSNGSLNLDSYDRFYSSERKEWKSV 84


>AF039717-3|AAK82917.1|  530|Caenorhabditis elegans Abnormal dauer
           formation protein16, isoform a protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 324 DSMPKGSFNMDDFKRFYSNEEEAKSIPYFWEKFDPEHYSIWYCQYKYPEELAKVFM 491
           +S P G   +++  +++S+     +IPYF E+  PE  + W    ++   L   FM
Sbjct: 178 ESAPDGRLKLNEIYQWFSD-----NIPYFGERSSPEEAAGWKNSIRHNLSLHSRFM 228


>AF020344-1|AAB84392.1|  530|Caenorhabditis elegans fork
           head-related transcriptionfactor DAF-16b protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 324 DSMPKGSFNMDDFKRFYSNEEEAKSIPYFWEKFDPEHYSIWYCQYKYPEELAKVFM 491
           +S P G   +++  +++S+     +IPYF E+  PE  + W    ++   L   FM
Sbjct: 178 ESAPDGRLKLNEIYQWFSD-----NIPYFGERSSPEEAAGWKNSIRHNLSLHSRFM 228


>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
           protein D2005.5 protein.
          Length = 1119

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 321 FDSMPKGSFNMDDFKRFYSNEEEAKSIPYFWEKFD 425
           ++ +P G    + FK  + +EEE  + P+ ++K D
Sbjct: 154 WEDLPDGWLTAETFKNKFYDEEEVTNNPFGYQKLD 188


>AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein
           protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 381 EEEAKSIPYFWEKF-DPEHYSIWY 449
           EEE K +P  WEK  DP+ YS ++
Sbjct: 141 EEEPKDLPPGWEKHEDPQGYSYYW 164


>AF153275-1|AAD54940.1|  301|Caenorhabditis elegans transcription
           factor RUN protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 292 MRNPRSPKTRLTRCQRGLSIWMTSSVSILTKRRRNRFLTSGRS 420
           ++ P SP++     +  +++   +  S+ +KRRRN  +TS  S
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNS 292


>AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical
           protein K02F6.2 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 378 NEEEAKSIPYFWEKFDPEHYSIW-YCQYKYPEELAKVFMS 494
           N+ + K  P  + KF PE+Y +W Y      +E ++ ++S
Sbjct: 49  NKFKGKKFPRKFPKFGPENYKVWCYVNELDKDETSEYYIS 88


>AF003145-2|AAB57715.2|  301|Caenorhabditis elegans Runt related
           protein 1 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 292 MRNPRSPKTRLTRCQRGLSIWMTSSVSILTKRRRNRFLTSGRS 420
           ++ P SP++     +  +++   +  S+ +KRRRN  +TS  S
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNS 292


>AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform c protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 381 EEEAKSIPYFWEKF-DPEHYSIWY 449
           EEE K +P  WEK  DP+ YS ++
Sbjct: 118 EEEPKDLPPGWEKHEDPQGYSYYW 141


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 381 EEEAKSIPYFWEKF-DPEHYSIWY 449
           EEE K +P  WEK  DP+ YS ++
Sbjct: 259 EEEPKDLPPGWEKHEDPQGYSYYW 282


>AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform b protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 381 EEEAKSIPYFWEKF-DPEHYSIWY 449
           EEE K +P  WEK  DP+ YS ++
Sbjct: 229 EEEPKDLPPGWEKHEDPQGYSYYW 252


>AB027412-1|BAA77765.1|  301|Caenorhabditis elegans RNT-1 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 292 MRNPRSPKTRLTRCQRGLSIWMTSSVSILTKRRRNRFLTSGRS 420
           ++ P SP++     +  +++   +  S+ +KRRRN  +TS  S
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNS 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,303,508
Number of Sequences: 27780
Number of extensions: 264600
Number of successful extensions: 841
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)