Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P15
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    28   0.63 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   3.4  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   5.9  

>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 138 VAFLYTHHPPEGTPLETFVVACI*VLH*AQQVSWRGLGRA 19
           + FL   HPPE TP +   +  I  L    Q  WR L +A
Sbjct: 385 IDFLKREHPPEDTPEKRVKIKRIRTLLDTWQQEWRILNKA 424


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 367 DAAARKEDLLANLEAISSGVSSISRTQLT 281
           DAAA     LANL+A   G + + +TQ++
Sbjct: 69  DAAAATYQFLANLQASFLGTTILGKTQVS 97


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 146 RSDHVK*LCAVDIPRAGLAALPRLIAGAGLTPAAGRQ--GRRRETRLCQL 289
           ++ H   L +VDIPRA +A + R  +    + +A  +  G +++  LC L
Sbjct: 438 KAQHDNTLSSVDIPRASIAHVVRATSAMSQSASARLKNLGLQQKAILCTL 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,346,272
Number of Sequences: 5004
Number of extensions: 19631
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)