Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P15
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167... 29 1.8
06_01_0859 - 6506029-6506133,6506255-6506319,6506461-6506539,650... 29 1.8
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757... 29 1.8
10_06_0174 - 11485684-11485962 28 2.4
03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824 28 2.4
10_06_0038 - 9958520-9958763,9959240-9959394 27 4.3
06_03_0120 + 16859617-16860504,16860970-16861146,16861242-168614... 27 4.3
09_04_0258 - 16175258-16176069,16176111-16176414 27 5.6
04_03_0716 + 18995712-18995904,18996511-18996614,18997280-189973... 27 5.6
09_03_0216 - 13529869-13530894 27 7.5
05_05_0160 + 22829401-22830658,22831671-22831703,22832586-22832728 26 9.9
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128... 26 9.9
>10_01_0140 -
1674305-1674586,1674683-1674838,1675676-1676622,
1678976-1679054,1679168-1679207,1679580-1679767,
1679869-1680024,1680752-1681713,1681866-1681914
Length = 952
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 40 RDLLRSMKNSDTSYDKSLKWCP-FWRVVGI*KGHRC 144
+DL+ S + + + +L+WCP F+ +VG+ G C
Sbjct: 797 KDLIFSYQGRKLTIENNLQWCPKFFNLVGLTLGKWC 832
>06_01_0859 -
6506029-6506133,6506255-6506319,6506461-6506539,
6506764-6506893,6507231-6507396,6507515-6507569,
6507693-6507739,6508416-6508614
Length = 281
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 188 RAGLAALPRLIAGAGLTPAAGRQGR 262
RAGLA R G G P GR+GR
Sbjct: 4 RAGLAMQSRAAVGVGAGPGVGRRGR 28
>01_06_0969 -
33472588-33474480,33475543-33475623,33475692-33475740,
33475866-33476281,33477208-33477447
Length = 892
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 397 PPPRRFTPLGDAAARKEDLLANLEAISSGVSSISRTQLTESCFSTTP 257
PP + P+GDA A +++LLA + S + ++ L + S +P
Sbjct: 283 PPAHKTLPVGDAVALEDELLAAVSEDRSDDAWLAFRSLASASLSPSP 329
>10_06_0174 - 11485684-11485962
Length = 92
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 86 KVSSGVPSGGWWVYRKATDARSDH 157
K SS P GGWW R T+ H
Sbjct: 66 KPSSSSPHGGWWRLRPVTELELTH 89
>03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824
Length = 206
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 200 AALPRLIAGAGLTPAAGRQGRRRETRL 280
AALPR+ AG L PA Q RRR L
Sbjct: 20 AALPRVGAGFALPPAVSCQPRRRRLSL 46
>10_06_0038 - 9958520-9958763,9959240-9959394
Length = 132
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 176 VDIPRAGLAALPRLIAGAGLTPAAGRQGRRRE 271
+D+P A + ALP PAAGR+ RR+
Sbjct: 22 IDVPPAAVDALPSPCRDGEGPPAAGRRSSRRK 53
>06_03_0120 +
16859617-16860504,16860970-16861146,16861242-16861435,
16861952-16862048
Length = 451
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 43 DLLRSMKNS-DTSYDKSLKWCPFWR 114
D +M +S T +D+ LKWCP +R
Sbjct: 293 DCRMNMNDSISTIFDRDLKWCPLFR 317
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 185 PRAGLAALPRLIAGAGLTPAAGRQGRRRE 271
PR G L RL A + PA R GRR +
Sbjct: 147 PRGGAVRLRRLRHAAAVPPARQRHGRRHD 175
>04_03_0716 +
18995712-18995904,18996511-18996614,18997280-18997393,
18997819-18997824,18998041-18998097
Length = 157
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 209 PRLIAGAGLTPAAGRQGRRRETR 277
PR A A PAAGR+ RR +R
Sbjct: 18 PRAAAAAAARPAAGRRAPRRRSR 40
>09_03_0216 - 13529869-13530894
Length = 341
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 181 VDRTESLDVVRARIGGLSIYPPPARR 104
+DR+ S + AR GG + PPARR
Sbjct: 14 IDRSRSGSSLDARDGGTGLVVPPARR 39
>05_05_0160 + 22829401-22830658,22831671-22831703,22832586-22832728
Length = 477
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 189 RGMSTAQSHLTWSERASVAFLYT-HHPPEGTPLETFVVA 76
R STA S W+ A + ++T PPE TF +A
Sbjct: 20 RSHSTAASRPAWAMMADMGLVHTEQEPPEPITTATFCLA 58
>05_05_0132 -
22611030-22611908,22612016-22612135,22612644-22612856,
22612968-22613288,22613421-22613504
Length = 538
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 179 DIPRAGLAALPRLIAGAGLTPAAGRQGRRR 268
D P AG AA R G P R+GRRR
Sbjct: 370 DEPAAGAAAELRAARGGERQPGPRREGRRR 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,070,627
Number of Sequences: 37544
Number of extensions: 200353
Number of successful extensions: 681
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -