Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P15
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       29   1.4  
SB_22677| Best HMM Match : RhoGAP (HMM E-Value=9.4e-13)                27   5.8  
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)                    27   5.8  
SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)           27   7.7  

>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 71  IQATTKVSSGVPSGGWWV--YRKATDARSDHVK*LCAVDIPRAGLAALPRLIAGAGL 235
           I  TT   SG PSG WW+  +R       D V  L  + +P  GL A P    G+ +
Sbjct: 539 ILITTVAISG-PSGAWWLAGWRVTPQGTRDQVAYLYHISMP-MGLRARPAAALGSAI 593


>SB_22677| Best HMM Match : RhoGAP (HMM E-Value=9.4e-13)
          Length = 499

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 216 RRGRAASPARGMSTAQSHLTWSERASVAFLYTHHPPEGTPLET 88
           RR R+   A+ MS  +S L  + +AS   L+   PP   PL+T
Sbjct: 15  RRSRSPQLAQRMSKTRSLLPRNSKASDFDLFVPPPPVVDPLQT 57


>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 3404

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 25   TETTPRDLLRSMKNSDTSYDKSLKWCPFW-RVVGI*KGHRCALGPRQVT 168
            TE+ PR+  RS +   TS   S+KW  FW +   + K H C LG RQ T
Sbjct: 1676 TESDPRE--RSPRRF-TSSGVSVKWRGFWDKESAVEKYHVC-LGTRQET 1720


>SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)
          Length = 441

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 122 VYRKATDARSDHVK*LCAVDIPRAGLAALPRLIAGAGLTPAAGRQGRRRETR 277
           +YRK+   RSDH +  C       G   LP  ++ + L P  G + R+   R
Sbjct: 263 IYRKSRKKRSDHGR--CGDREHMEGARLLPLPVSASSLVPEDGLKLRKHFNR 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,093,059
Number of Sequences: 59808
Number of extensions: 177654
Number of successful extensions: 398
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)