Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P13
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    91   9e-20
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   3.7  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    25   8.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.7  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    25   8.7  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 91.5 bits (217), Expect = 9e-20
 Identities = 72/199 (36%), Positives = 92/199 (46%), Gaps = 5/199 (2%)
 Frame = +3

Query: 12  QIGGEKNGGTRTVLL--KSRKSFYPTQDKIRRRSHGKSFSKHVRRT--RPNLTPGTVCIL 179
           ++ G KNGG R VL   ++   +YP      R +  K   K VR T  R +L PGTVCIL
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAY----RENVPKKARKAVRPTKLRASLAPGTVCIL 60

Query: 180 LAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST-KVDLGDFKLPAH 356
           LAGR  GKR              TGP+  N  P+RR+  RYVI TS  K+D+    +   
Sbjct: 61  LAGRFRGKR-VVVLSQLEDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSV-EK 118

Query: 357 LDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVDEAVIKAIRLRPDK 536
              AYF              + E  FA    K     +R ADQK VD  ++ AI+  P+ 
Sbjct: 119 FTKAYF----AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNM 174

Query: 537 KTLRGYLMASFGLRSSQFP 593
           K    YL ASF L +   P
Sbjct: 175 KE---YLAASFALSNGDRP 190


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 211 CSLECCRVVCYSSLDLL 261
           CSLE   +VCYSSL +L
Sbjct: 764 CSLEVGPIVCYSSLKVL 780


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 18  GGEKNGGTRTVLLKSRKSFYPTQDKIRRRSH 110
           GGEKNG      L S  S+  T  +   RSH
Sbjct: 308 GGEKNGEAPLEALLSLLSYINTHQRQSERSH 338


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 69  SFYPTQDKIRRRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 206
           +FY      R  SH  S S     ++P LT  +  +L +  H  +R
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYER 467


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 265 KAKGPVKSSRPLGNTPTSTTR 203
           KAK P+KSS+   N P S  R
Sbjct: 3   KAKSPIKSSKKSVNQPKSVLR 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,226
Number of Sequences: 5004
Number of extensions: 41452
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)