Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P13
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 103 1e-22
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 101 6e-22
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 30 1.6
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331 29 2.9
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 29 2.9
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 27 8.8
03_05_0378 - 23619169-23619225,23619389-23619454,23620052-236202... 27 8.8
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 103 bits (247), Expect = 1e-22
Identities = 80/196 (40%), Positives = 101/196 (51%), Gaps = 7/196 (3%)
Frame = +3
Query: 27 KNGGTRTVLLK----SRKSFYPTQD-KIRRRSHGKSFSKHVRRTRPNLTPGTVCILLAGR 191
KNGGT K + FYP D K R S K+ +R T +TPGTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKANPTKLRST---ITPGTVLILLAGR 87
Query: 192 HAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAY 371
+ GKR TGPF N P+RR+ Q YVI TSTKVD+ K+ DD Y
Sbjct: 88 YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVD-KFDDKY 146
Query: 372 FXXXXXXXXXXXXXXQGEDIFATKKE--KYVPSEQRKADQKLVDEAVIKAIRLRPDKKTL 545
F +GE +F T+KE K +P + +K DQK VD +IKAI + PD L
Sbjct: 147 F---ARDKKAKAKKTEGE-LFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPD---L 198
Query: 546 RGYLMASFGLRSSQFP 593
+ YL G R+S++P
Sbjct: 199 KSYL----GARNSRWP 210
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 101 bits (241), Expect = 6e-22
Identities = 68/161 (42%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Frame = +3
Query: 117 SFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQ 296
S + + R ++TPGTV ILLAGR GKR TGPF N P+RR+ Q
Sbjct: 86 SLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQ 145
Query: 297 RYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE--KYVPSEQ 470
YVI TSTKVD+ + DD YF +GE +F T+KE K +P E
Sbjct: 146 PYVIATSTKVDISGVNV-EKFDDKYF---SRDKKQKAKKTEGE-LFETEKEATKNLP-EF 199
Query: 471 RKADQKLVDEAVIKAIRLRPDKKTLRGYLMASFGLRSSQFP 593
+K DQK+VD +IKAI PD KT YL A F LR P
Sbjct: 200 KKEDQKVVDAELIKAIEAVPDLKT---YLGARFSLRDGDKP 237
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 298 RCGILRRGHALKAKGPVKSSRPLGNTPTSTT 206
RCG+ ++GH A GP + P ++ +TT
Sbjct: 23 RCGLPKKGHVCAAGGPAPTPSPSSSSGAATT 53
>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
Length = 599
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 253 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLGLVLRTCLL 122
P ++ P+ +TP+ T + CLPA+R T R +LR L+
Sbjct: 258 PTWTTSPILSTPSHTWQRSLCLPASRSFTPRKSRRDQLLRLALV 301
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 432 FATKKEKYVPSEQRKADQKLVDEAVI----KAIRLRPDKKTLRGYLMASFGLRSS 584
FA ++K ++ +KA + E I KA+ L PD + L YL+ ++G R S
Sbjct: 314 FARFQDKVASTQPQKAARLQTTERKISILEKAVELNPDNEELLLYLLKAYGERDS 368
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 253 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLG 146
P+KS+ P GN TTRL + A R+ TV + LG
Sbjct: 440 PLKSNHPKGNMILVTTRLLSL--AQRIGTVKPIELG 473
>03_05_0378 -
23619169-23619225,23619389-23619454,23620052-23620224,
23620454-23620664,23621056-23621280,23622157-23622493,
23624200-23624627
Length = 498
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 599 DVRELTRSEPERGHEVTAECLLVGPESDRLYHG 501
DVR + GH CL GP+S L+ G
Sbjct: 247 DVRSREHIQAFSGHRGAISCLSFGPDSSELFSG 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,272,220
Number of Sequences: 37544
Number of extensions: 324081
Number of successful extensions: 940
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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