Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P13
(609 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0) 87 8e-18
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 32 0.42
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013) 29 2.9
SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_44729| Best HMM Match : SET (HMM E-Value=0) 28 5.1
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86) 28 5.1
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023) 28 6.8
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
Length = 112
Score = 87.4 bits (207), Expect = 8e-18
Identities = 51/115 (44%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Frame = +3
Query: 255 PFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAH--LDDAYFXXXXXXXXXXXXXXQGED 428
PF N PLRRIPQ YVI TST +D+ D KLP H D++YF + ED
Sbjct: 2 PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYF------KGEPKKKKRSED 55
Query: 429 IFATKKEKYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLMASFGLRSSQFP 593
+F E+ PSEQR ADQK VD+ ++ I P+ K YL + F LR QFP
Sbjct: 56 MFEEAAEEKKPSEQRIADQKAVDDQILPKISAVPNMKK---YLSSLFSLRKGQFP 107
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 196 LASVSCSLECC--RVVCYSSLDLLLSTRVPCAGFR 294
+A SC + CC RVVCYS + S RV C R
Sbjct: 162 VACCSCRVACCSCRVVCYSCRVVCYSCRVACCSCR 196
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 208 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 294
SC + CC RVVCYS + S RV C R
Sbjct: 124 SCRIACCSCRVVCYSCRVVFCSCRVACCSCR 154
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 208 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 294
SC + CC RVVCYS + S RV C R
Sbjct: 187 SCRVACCSCRVVCYSCRVVFCSCRVACCSCR 217
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 169 CAFCWRADTLASVSCSLEC--CRVVCYSSLDLLLSTRVPCAGFRSA 300
C + + +A SC + C CRVVCYS S RV C R A
Sbjct: 202 CRVVFCSCRVACCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVA 247
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +1
Query: 208 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 294
SC + CC RVVCYS S RV C R
Sbjct: 145 SCRVACCSCRVVCYSCRVACCSCRVACCSCR 175
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 196 LASVSCSLEC--CRVVCYSSLDLLLSTRVPCAGFR 294
+A SC + C CRVVCYS S RV C R
Sbjct: 169 VACCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCR 203
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 208 SCSLECC--RVVCYSSLDLLLSTRVPCAGFRSA 300
SC + CC RVVCYS S RV C R A
Sbjct: 229 SCRVACCSCRVVCYSCRVACCSCRVVCYSCRVA 261
>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
Length = 340
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 265 KAKGPVKSSRPLGNTPTSTTRLPACLPANRMHTVP 161
K+ P KS++P + PT+ T LP P R+ ++P
Sbjct: 202 KSTKPTKSTKPTESKPTAPTSLPDQRPNCRLPSMP 236
>SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 154 SLPAQCAFCWRADTLASVSCSLECCRVVC 240
S+ QC W A S+S +++ C+ VC
Sbjct: 127 SVEKQCVVRWLASVRTSISTAVDVCKAVC 155
>SB_44729| Best HMM Match : SET (HMM E-Value=0)
Length = 1112
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 111 HENDA*SCPEWGRMISCFSAGLYECLH 31
HE+D C + G++I C +G +C H
Sbjct: 974 HEDDCFICGDGGQLIMCDRSGCLKCYH 1000
>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 28.3 bits (60), Expect = 5.1
Identities = 8/24 (33%), Positives = 19/24 (79%)
Frame = +3
Query: 66 KSFYPTQDKIRRRSHGKSFSKHVR 137
++ PT+++IR+ SHG++ + H++
Sbjct: 372 RNVQPTENRIRKESHGRTIALHLK 395
>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
Length = 1222
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 185 GQTRWQ-ACRARWSVAEWSATLHWTFCFQRVSPAQDSAALC 304
G+ RW+ A + W + W + + C QRV D ALC
Sbjct: 178 GEMRWKLALKRNWLYSNWKCVVCYRNCSQRVDSHFD-VALC 217
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 265 KAKGPVKSSRPLGNTPTSTTRLPACLPANRMHTVPG 158
+ K PV +SR L N PT T + + H +PG
Sbjct: 1009 RIKTPVPTSRLLLNVPTQNTAKSIIIQTYKKHALPG 1044
>SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)
Length = 514
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 547 RSVFLSGRSLIAFITASSTSFWSALRCS-DGTYFSFLVAKMSSPC 416
R VFL G S+IAF T SS+SF+S + + F LVA+ C
Sbjct: 54 RGVFLYGVSIIAF-TFSSSSFYSHYGSTLINSTFKSLVAENPGDC 97
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 100 VVLMARVSVNMCVGRDLTSL-PAQCAFCWRADTLASVSCSLECCRVVCYSSLDLLLSTRV 276
V+ +RV + +C R L P++ + SVSC C V+C S + ++L
Sbjct: 83 VLCPSRVCIVLCPSRVCIVLCPSRVCIVLCPSRVVSVSCPYRVCIVLCPSCVCIVLCPSC 142
Query: 277 PC 282
C
Sbjct: 143 VC 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,471,524
Number of Sequences: 59808
Number of extensions: 379639
Number of successful extensions: 1111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -