Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P12
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 28 1.0
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 27 1.8
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 26 3.1
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 5.5
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 5.5
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 5.5
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 25 5.5
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 25 7.2
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 25 9.5
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 25 9.5
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 9.5
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 25 9.5
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 13 IVSFSSLMVVYYQPQRQYILEYRL*VYQSSQTNLLTWTELLTKVLQKGLIYLTQWLL 183
I S++SL V + P Q + L TN W+E + + K IYL Q+ +
Sbjct: 1033 INSWTSLRPVLFGPSEQLPRNFLLRNDIVPNTNNSAWSEYIRNLYPKAYIYLLQYTI 1089
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 6 RPNCLLFITHGGLLSTTEAIHFGVPIIGIPV 98
RP CL F TH +S T+ +P+I IPV
Sbjct: 130 RPGCLKFTTHEINVSYTDT---SIPVIHIPV 157
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = -1
Query: 337 CGAPRV-FTTCCTQCTNSDPGC 275
CG RV F CC QCT+ C
Sbjct: 24 CGICRVPFDGCCPQCTSPGDNC 45
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 197 RSFQFNSHCVR*INPFCKTFVNSSVHVNKLVCEDWYTYNRYSKM 66
+S F+ + IN F + + ++ + + ++ WYTY SKM
Sbjct: 270 KSAIFHIYKTEGINGFFRGYSSNMLKIIPVMSITWYTYETVSKM 313
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 124 STLTNWSAKTGIPII 80
ST+ NW+ KTG P++
Sbjct: 456 STMHNWTKKTGYPVL 470
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 347 PGPYYALVPEDVPGSRC 397
P PYY +PE P RC
Sbjct: 123 PNPYYLEIPETQPQVRC 139
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 25.4 bits (53), Expect = 5.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 365 LVPEDVPGSR---CCNHHSYILSCNSSKALL*SIICE*ETYCKEENKL 499
L PE+V ++ CC S + N +ALL +++CE T +KL
Sbjct: 533 LTPENVRKAQKIVCCEKPSVSYNNNLPEALLDALLCEITTLASVYHKL 580
>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 332 ATSTFPGPYYALVPEDVPGSRCCNHHSYI 418
+T +P Y+A+V + + G+R N HS I
Sbjct: 34 STVLYPAVYHAIVNQPMLGARIHNCHSKI 62
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 299 LGTARCKNTWSATSTFPGP 355
LGT R + ++S STFP P
Sbjct: 575 LGTLRSRPSFSEKSTFPAP 593
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = +3
Query: 246 LSMIYHDRPVHPGSELVHWVQHVVKTRGAPHLRSPALIMPWY 371
++ ++ RP+ PG V + +++ G P +++ P Y
Sbjct: 216 IAELFIGRPLFPGDSSVEQLVEIIRVLGTPSYHEISVMNPNY 257
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 513 NIQRFNLFSSLQYVSYSQIIDYK 445
N+++FNL S L V + + DYK
Sbjct: 345 NLEKFNLKSQLDKVVFHLVPDYK 367
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -3
Query: 143 TFVNSSVHVNKLVC-EDW 93
++VN S++V LVC EDW
Sbjct: 371 SYVNQSLNVQALVCLEDW 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,396
Number of Sequences: 5004
Number of extensions: 50385
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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