Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P11
         (285 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22175| Best HMM Match : HemolysinCabind (HMM E-Value=1.6e-08)       28   1.0  
SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25)           27   2.4  
SB_15799| Best HMM Match : PH (HMM E-Value=0.76)                       26   4.2  
SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)                   26   4.2  
SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)               26   5.6  
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)                    25   7.4  
SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.4  
SB_40811| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_11783| Best HMM Match : C4 (HMM E-Value=1)                          25   9.8  
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)               25   9.8  
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_16521| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_22175| Best HMM Match : HemolysinCabind (HMM E-Value=1.6e-08)
          Length = 298

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 110 QGSRSCRACSNRHGLIRKYGLNICRQCFR 196
           Q ++ C AC +R  L+   G N C   FR
Sbjct: 183 QNNKGCNACDSRFRLVFSKGCNACDSRFR 211


>SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 107 GQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 232
           G+ +R   AC +   ++   G N+CR C   + +D   + +D
Sbjct: 59  GESARF-EACCDGQDMVNDNGANVCRNCGVHHGYDYAVEYVD 99


>SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25)
          Length = 357

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 16  IVFPSFGSRENKLILHHGSRKYLVFTPT*IRAGFPFMPSLLKQTWSHS*IWLEYLQ 183
           I+F S G+  N +++H     Y     T  RA  P +P ++     H  + L   Q
Sbjct: 9   IIFTSGGTESNNMVIHTAIEHYKKQRETTGRAILPPIPHIITSNQEHDSVCLPLKQ 64


>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
          Length = 836

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 85  PDICVTHDVKLVCFLETQKRETRSKCLV 2
           PDIC+T  ++  CF  TQK + ++  +V
Sbjct: 81  PDICLTTCMEQSCFKITQKNKVKNAEMV 108


>SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)
          Length = 335

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +2

Query: 89  SHPRRYGQGSRSCRACSNRH--GLIRKYGLNICRQC 190
           + P R+ +   SCR C  +H  G    Y   ICR+C
Sbjct: 275 ARPSRFDRNQNSCRFCGLQHDRGNCPAYNA-ICRRC 309


>SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)
          Length = 637

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 6   RHFDRVSLFWVSRKQTNFTSWVTQISGIHTHVDTGRVPVHAEPAQTDMV 152
           RH D   L WVS   +   S+ +  +  H    TG+    A P+  D +
Sbjct: 212 RHHDSGVLLWVSVMSSTQESYSSNSTSSHYPYSTGQNSRPARPSSHDYI 260


>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 434

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -2

Query: 140 LSRLGMNGNPARIYVGVNTRYLR-DP*CKISLFSRD 36
           L  L   G P RIY G+   YL+  P    SL  RD
Sbjct: 172 LKILWKQGGPRRIYAGLTASYLKVMPAAATSLLVRD 207


>SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 154 HS*IWLEYLQAVLPRVCA*YWI 219
           H  +W  YLQA+ P + A  WI
Sbjct: 329 HIYLWQNYLQAIQPHLQAFLWI 350


>SB_40811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
 Frame = +2

Query: 98  RRYGQGSRSCR--ACSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 232
           R Y     S R  AC      +   G NICR C   + +D   +  D
Sbjct: 19  REYVTKGESVRFEACFGMQDRVNDNGANICRNCGVHHGYDYAVEWFD 65


>SB_11783| Best HMM Match : C4 (HMM E-Value=1)
          Length = 565

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 164 YGLNICRQCFREYAHDIGFKK 226
           Y  ++C+ CFR + HD   +K
Sbjct: 440 YRQHLCKVCFRAWMHDARMEK 460


>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
          Length = 509

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 125 MNGNPARIYVGVNTRYLRDP*CKISLFSRDPKEGNTIKMP 6
           ++ +P R+ VG   + L      ISL +R+ K  N I +P
Sbjct: 169 LSASPGRLRVGSANKLLSRSCENISLLNREQKSPNKIILP 208


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 104 YGQGSRSC--RACSNRHGLIRKYGLNICRQCFREYAHD 211
           Y +GS  C  ++C   +    +YG N C  C   Y+ D
Sbjct: 144 YDRGSVQCSVKSCLLANRRPCEYGQNFCGPCLNGYSQD 181


>SB_16521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 67  GSRKYLVFTPT*IRAGFPFMPSLLKQTWSH 156
           G R+YL+++P        F P   +  W H
Sbjct: 81  GKRQYLLYSPNPQMGQLAFRPDKRQNVWQH 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,149,779
Number of Sequences: 59808
Number of extensions: 186657
Number of successful extensions: 420
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 303237528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)