Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P10
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659...    31   0.73 
09_02_0054 - 3678467-3679435,3680578-3680601                           29   3.9  
07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50...    29   3.9  
06_02_0013 - 10581449-10585105                                         28   5.2  
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769...    28   6.8  
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042...    27   9.0  

>06_02_0038 + 10865068-10865150,10865249-10865335,10865835-10865936,
            10867000-10870078
          Length = 1116

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 179  LKLSYIILYNVFFFCNKIIFLEYNVVKCL*L*SVLIKHR 295
            LK+++ I Y VFF+CN   F+   V+  L L + + K++
Sbjct: 982  LKVTHPIRYKVFFYCNATAFMASTVMVILLLNNTISKYK 1020


>09_02_0054 - 3678467-3679435,3680578-3680601
          Length = 330

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 448 GGCGYILFGVKIFTIMLLSGEETGDYVCMDKG 353
           GG G  + G K++ +   SGEE  D  C D G
Sbjct: 177 GGPGLAVAGGKVWVVYGFSGEELDDVHCYDPG 208


>07_01_0069 +
           505291-505327,505726-505956,506317-506652,507025-507372,
           507735-508594,508902-508971,509157-509371,509477-509537,
           509606-509715,510644-510694,510794-510916
          Length = 813

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 441 QPPCPYVNFFHKLVIGKQEAFDNEKNACFYRH 536
           +P CP VN    LV GK+   DN    C   H
Sbjct: 382 EPKCPEVNSAEDLVAGKKGNKDNNSQLCSSLH 413


>06_02_0013 - 10581449-10585105
          Length = 1218

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 179 LKLSYIILYNVFFFCNKIIFLEYNVVKCL*L*SVLIKHRVI*KSLMLC 322
           L+ +Y++ YN F  CN   F+   V   L L   L  H +  K++++C
Sbjct: 291 LRSNYLLRYNFFMSCNATSFVASLVTIMLLLSPELSMHGIRSKAVIVC 338


>06_02_0032 +
           10775031-10775520,10775661-10776246,10776333-10776973,
           10777270-10777973
          Length = 806

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 203 YNVFFFCNKIIFLEYNVVKCL*L*SVLIKHRVI 301
           Y VFF+CN I F    V+  L     ++KH ++
Sbjct: 435 YKVFFYCNSIAFAVSLVIIILVQYKPILKHHIL 467


>11_06_0061 -
           19702893-19703869,19703960-19704098,19704166-19704287,
           19704362-19704416,19704508-19704624,19704718-19705413,
           19706358-19706393,19707190-19708236
          Length = 1062

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 387 SPDNSIMVNIFTPNNIYPQPPCP 455
           S D  ++V  F P++I P+PP P
Sbjct: 100 SDDGGVLVEHFAPSHIRPRPPPP 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,821,058
Number of Sequences: 37544
Number of extensions: 270169
Number of successful extensions: 609
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)