Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P10
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF068708-6|AAC17758.1|  341|Caenorhabditis elegans Hypothetical ...    29   2.7  
U88176-3|AAB42284.1|  210|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 414 IFTPNNIYPQPPCPYVNFFHKLVIGKQEAFDNEKN 518
           +F P N+YP PP    N +    +  QE+FD   N
Sbjct: 567 LFNPTNLYPTPPSSLPNTY----VPNQESFDESVN 597


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 414 IFTPNNIYPQPPCPYVNFFHKLVIGKQEAFDNEKN 518
           +F P N+YP PP    N +    +  QE+FD   N
Sbjct: 567 LFNPTNLYPTPPSSLPNTY----VPNQESFDESVN 597


>AF068708-6|AAC17758.1|  341|Caenorhabditis elegans Hypothetical
           protein C18G1.3 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 569 YPSNLFDERLKMTVKTSIFFIIKGFLFPNN*FMEKI 462
           YPSNL     +   K+ I FI+ G +  ++ F EKI
Sbjct: 129 YPSNLMRNIARKGAKSDIHFIVDGDMIMSDGFAEKI 164


>U88176-3|AAB42284.1|  210|Caenorhabditis elegans Hypothetical
           protein F18F11.1 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -2

Query: 615 FRVTKTLATFCFFVMLSIKFV*RT-SENDGKNKHFFHYQRLPVSQ*LIYGKN*RTDMAVV 439
           FR+TKT A      + S KF+    SE DGK K +  +    V    ++G+N   +M  +
Sbjct: 71  FRLTKTHALNLGKFVFSYKFLQGALSEIDGKKKEWHSFAAALVMGYYVFGENNAVNMQ-I 129

Query: 438 DIYYL 424
           ++Y L
Sbjct: 130 NLYLL 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,375
Number of Sequences: 27780
Number of extensions: 277787
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)