Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P09
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    28   3.9  
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974...    28   5.1  
12_02_0728 + 22606447-22606461,22606651-22606971,22607821-226079...    27   6.8  
08_01_0382 - 3402015-3403604                                           27   8.9  
06_02_0237 + 13341469-13342259,13342839-13343223,13343314-133434...    27   8.9  

>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 514 NIYNESGATVTHLVICILVLWRRLFGRNQSENRQKKWFRDAI 389
           N  N+SG+T   L   I V  +R  G   +    KKW RDA+
Sbjct: 232 NSNNKSGSTKWDLSATITVKQKRRAGGGIASTAYKKWERDAM 273


>01_06_1760 -
           39697079-39697162,39697280-39697340,39697415-39697479,
           39697579-39697860,39697938-39698012,39698121-39698195,
           39698343-39698399,39698653-39698726,39698912-39699055,
           39699608-39699662,39700027-39700149,39700276-39700320,
           39701068-39701160,39701249-39701662
          Length = 548

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 34  AALILVP---SALLSIRLSPLNPESPSVLIHTQSAT 132
           AAL+L     SA LS+ ++ + P +PS+L+ + SAT
Sbjct: 5   AALLLTAATGSAALSVGVAAVGPRAPSLLLRSASAT 40


>12_02_0728 +
           22606447-22606461,22606651-22606971,22607821-22607941,
           22608041-22608193,22608754-22609424
          Length = 426

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 27  CLRRPNPSPVSIIVHQALSVESGESVSPHPY 119
           C RRP P P S+ + +  +V  G +V+  P+
Sbjct: 32  CARRPRPRPHSVTISEFGAVGDGVTVNTLPF 62


>08_01_0382 - 3402015-3403604
          Length = 529

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 394 HR-GTIFSDGFHSDCGRTDGARAQVYILLDE*PWLRSRYIY 513
           HR G ++S  +    G++D ARA  YI+     WLRS Y Y
Sbjct: 414 HRAGILYSIQYTVYWGQSDQARANEYII-----WLRSLYTY 449


>06_02_0237 +
           13341469-13342259,13342839-13343223,13343314-13343427,
           13343517-13344011
          Length = 594

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 13  SARRNAYAALILVPSALLSIRLSPLN-PESPSVLIHTQSA 129
           +A R+A  A  LV S  +S     L+ PE P VL HT +A
Sbjct: 39  TAVRSAVLAFSLVASRPISFHYVGLDEPEKPDVLSHTNAA 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,476
Number of Sequences: 37544
Number of extensions: 239076
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)