Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P09
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25622| Best HMM Match : Phage_Treg (HMM E-Value=2.1)                29   1.7  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_7903| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_57091| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_25622| Best HMM Match : Phage_Treg (HMM E-Value=2.1)
          Length = 329

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -2

Query: 441 SAAIRVKTVRKNGSAMPFKEFFLSDIARLYIYSLAILHSKNSHYHR-*VDKGDVARRRVA 265
           SA + ++   +N +  P + + +S I +  +    +++SKN+H+ R  V+ G ++RRR A
Sbjct: 126 SADLDIRKNNRNFNIAPIRLYCIS-IGKAELIDHKLMYSKNTHFSRMIVNMGVLSRRRAA 184


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 310  PQISG*RRCGKKTCCVIWNSEIAFLIKEFFYTLKC 206
            P I    +C  K CC   +  +A +I++  YT+KC
Sbjct: 6454 PDIPDVEKCAGK-CCQSRDCHVALVIRDACYTVKC 6487


>SB_7903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 222 KNSFIKKAISEFHITQHVFLPHLLYPLIC 308
           +N   KK  +  + TQ VFLPH  Y + C
Sbjct: 62  RNIETKKLFTGTYSTQAVFLPHRFYKISC 90


>SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 27  CLRRPNPSPVSIIVHQALSVESGESVSPHPYSIRDGPIVILYNYNHI*VVFQTHLN 194
           C +  N   ++ +++Q LSV++G  V+    ++RDG  V     + I  +F   LN
Sbjct: 576 CSKSVNADDLAQVLNQCLSVDNGVKVNSLLAAMRDGASVNQAALDRIAFIFPKLLN 631


>SB_57091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 200 ILTFQCVKKFFY*KSYLRVPY 262
           IL + C +K F+ KSY+ +P+
Sbjct: 17  ILAYSCGRKIFHLKSYIELPF 37


>SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 200 ILTFQCVKKFFY*KSYLRVPYN 265
           IL + C +K F+ KSY+  P+N
Sbjct: 218 ILAYSCGRKTFHLKSYIEHPFN 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,945,552
Number of Sequences: 59808
Number of extensions: 286861
Number of successful extensions: 547
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)