Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_P09
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-3|CAA85332.1|  297|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF497825-1|AAM18103.1|  670|Caenorhabditis elegans putative Na-H...    28   3.4  
AF016447-15|AAR30208.1|  651|Caenorhabditis elegans Na/h exchang...    28   3.4  
AF016447-14|AAG24015.2|  670|Caenorhabditis elegans Na/h exchang...    28   3.4  
CU457744-2|CAM36368.1|  169|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z36753-3|CAA85332.1|  297|Caenorhabditis elegans Hypothetical
           protein T09A5.4 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 438 AAIRVKTVRKNGSAMPFKEFFLSDIARLYIYSL--AILHSKNSHYHR*VDKGDVA 280
           AA  + ++ K  S +PF+++   DIARL+  +L  AI H   +  H     G VA
Sbjct: 85  AAHALVSIWKRDSDLPFEQYISGDIARLFNKALDVAIRHMDPTVVHTIARDGGVA 139


>AF497825-1|AAM18103.1|  670|Caenorhabditis elegans putative Na-H
           exchanger isoform 3 protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 246 ISEFHITQHVFLPHLLYPLICGSGYF 323
           +S  H+  H F  +LL P+I  +GYF
Sbjct: 90  LSGVHLDSHAFFLYLLPPIIFDAGYF 115


>AF016447-15|AAR30208.1|  651|Caenorhabditis elegans Na/h exchanger
           protein 3, isoform b protein.
          Length = 651

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 246 ISEFHITQHVFLPHLLYPLICGSGYF 323
           +S  H+  H F  +LL P+I  +GYF
Sbjct: 71  LSGVHLDSHAFFLYLLPPIIFDAGYF 96


>AF016447-14|AAG24015.2|  670|Caenorhabditis elegans Na/h exchanger
           protein 3, isoform a protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 246 ISEFHITQHVFLPHLLYPLICGSGYF 323
           +S  H+  H F  +LL P+I  +GYF
Sbjct: 90  LSGVHLDSHAFFLYLLPPIIFDAGYF 115


>CU457744-2|CAM36368.1|  169|Caenorhabditis elegans Hypothetical
           protein T06A10.3 protein.
          Length = 169

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 257 PYNATRLLATSPLSTYLW*WLFLECNIARLYIYNLAISLRKNSLN 391
           PYN+   ++    +T+LW     +C   +L+ Y  ++ L++ S N
Sbjct: 22  PYNSDHKVSMEEFNTHLW-----KCRTEKLHFYPHSLKLKRCSYN 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,207,553
Number of Sequences: 27780
Number of extensions: 221516
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)