Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_P08
(254 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 96 8e-22
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 96 8e-22
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 30 0.056
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 0.23
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 27 0.40
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 26 0.91
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 25 1.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 2.1
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 24 3.7
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 24 3.7
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo... 23 4.9
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 23 4.9
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 23 4.9
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 23 6.4
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 23 6.4
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 23 6.4
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 23 6.4
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 23 6.4
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 23 8.5
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 23 8.5
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 23 8.5
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 95.9 bits (228), Expect = 8e-22
Identities = 42/67 (62%), Positives = 55/67 (82%)
Frame = +2
Query: 23 MSSLELQKRLAASVMRCGKQKVWLDPNEIHEIANTSSRQNIRKMIKDGLVIKKPVAVHSL 202
M++L QKRLAASV++CGK+KVW+DPNEI EI+N +SRQNIRK++KDGLVI+KP +HS
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 203 CSCSQKH 223
+ H
Sbjct: 61 FRIRKTH 67
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 207 RVRKNTEARRKGRHCG 254
R+RK A+R GRH G
Sbjct: 62 RIRKTHAAKRLGRHTG 77
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 95.9 bits (228), Expect = 8e-22
Identities = 42/67 (62%), Positives = 55/67 (82%)
Frame = +2
Query: 23 MSSLELQKRLAASVMRCGKQKVWLDPNEIHEIANTSSRQNIRKMIKDGLVIKKPVAVHSL 202
M++L QKRLAASV++CGK+KVW+DPNEI EI+N +SRQN+RK+IKDGLVI+KP +HS
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 203 CSCSQKH 223
+ H
Sbjct: 61 FRIRKTH 67
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 207 RVRKNTEARRKGRHCG 254
R+RK A+R GRH G
Sbjct: 62 RIRKTHAAKRLGRHTG 77
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.9 bits (64), Expect = 0.056
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -2
Query: 166 TILDHLTDVLSGTSISDFMDLVWIKPHLLFTAS 68
+I +H++DV G ++ ++L+ I+P +LF A+
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILFKAN 383
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.9 bits (59), Expect = 0.23
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 145 DVLSGTSISDFMDLVWIKPHLLFTASHNRGCK 50
+VLS +D + PHLL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.1 bits (57), Expect = 0.40
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 35 ELQKRLAASVMRCGKQKVWLDPNEIHEIANTSSR-QNIRKMIKDG 166
+L +RLAA + RC Q+ W + ++ ++ + NI+K+I DG
Sbjct: 1113 QLAERLAARLDRCKTQRQW--DHVVYALSLLPHKADNIQKLIDDG 1155
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 0.91
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 219 FCEHEHREWTATGFLMTRPSLIILRMFC 136
F E REWT L T +++R FC
Sbjct: 87 FWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 1.6
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -3
Query: 162 SLIILRMFCLELV---LAISWISFGSSHTFCLPHRI 64
SL + + LEL+ ++ W+ FGS + C+ R+
Sbjct: 2 SLQLEKNLILELIPHFYSLGWMKFGSGYAICVKDRV 37
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.6 bits (51), Expect = 2.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 193 DSNWFLDDQTILDHLTDVLSGTSISDFMD 107
D + ++++ D+L + +GT ISD MD
Sbjct: 113 DKSAHTEEESSNDNLVKITAGTIISDIMD 141
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 23.8 bits (49), Expect = 3.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 98 PNEIHEIANTSSR 136
PNE+H+ AN S R
Sbjct: 328 PNEVHQFANDSKR 340
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 23.8 bits (49), Expect = 3.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 186 LLSIPCARVRKNTEARRKGR 245
L+S+PC+R + A R GR
Sbjct: 728 LVSVPCSRASADQRAGRAGR 747
>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -3
Query: 111 WISFGSSHTFCLPHRITEAASLFCNSRELILA 16
W+ G + LP ++ +AA+ C S +A
Sbjct: 164 WVFNGIGRSMKLPEKLIDAATAVCGSGPAFVA 195
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 23.4 bits (48), Expect = 4.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 124 ISDFMDLVWIKPHLLFTAS 68
ISDF+ ++ I HLL+ AS
Sbjct: 427 ISDFLSVMTIHIHLLYLAS 445
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 23.4 bits (48), Expect = 4.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 116 IANTSSRQNIRKMIKDGLVIKKPVAVHSLCSC 211
+ N SSR + + L++ KP+ S C+C
Sbjct: 177 LENESSRDDFVNDFSEPLLLSKPLNNTSSCNC 208
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 23.0 bits (47), Expect = 6.4
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -3
Query: 234 CAPLCFCEHE 205
C P+CFC +E
Sbjct: 1236 CCPVCFCPYE 1245
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 116 IANTSSRQNIRKMIKDGLVIKKPVAVHSLCS 208
+AN S QN + ++ +K+ + VHS+ S
Sbjct: 119 LANESDIQNAQVEMQGAFCLKRSILVHSVKS 149
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 23.0 bits (47), Expect = 6.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 137 QNIRKMIKDGLVIKKPVAVHSLCSCSQ 217
+++R +KD + +PV+V S + SQ
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQ 167
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 23.0 bits (47), Expect = 6.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 39 YRRGLQPLLCDAV 77
Y+RG QPLL D V
Sbjct: 194 YKRGFQPLLPDVV 206
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 23.0 bits (47), Expect = 6.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 145 DVLSGTSISDFMDLVW 98
D+ GT+IS+F DLV+
Sbjct: 643 DISCGTTISNFTDLVF 658
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 22.6 bits (46), Expect = 8.5
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = +2
Query: 83 KVWLDPNEIHEIANTSSRQNIRKMIKDGLVIKK 181
K WLDP + ++ T + +++++ I ++K+
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKE 321
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 22.6 bits (46), Expect = 8.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 92 LDPNEIHEIANTSSRQNIRKMI 157
L+P H+ +T SR+ RK++
Sbjct: 51 LNPRNYHKFVDTISRKPTRKLV 72
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 22.6 bits (46), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 166 TILDHLTDVLSGTSISDF 113
TIL H + +L+ TSIS F
Sbjct: 140 TILRHQSPLLANTSISSF 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,092,096
Number of Sequences: 5004
Number of extensions: 18429
Number of successful extensions: 73
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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